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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCAACTCCTAAGGGTGTCCTGAAGCTAATGAAGGCAGACAATTTGACCATTTATCATGTAAAAAGTCATCTTCAGgtctgatatctagccctattgttggacgttattgaaaatagctgaaaattattctctatctgaattttatctaacaatgtgtttcag

Basic information

species Zea mays
transcript GRMZM2G162409_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G162409_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os07g25710.4 (Oryza sativa), 5'ss of exon 4
AAGCAACTCCTAAGGGTGTCCTGAAGCTAATGAAGGCAGACAATTTGACCATTTATCATGTAAAAAGTCATCTTCAGgtctgatatctagccctattgttggacgttattgaaaatagctgaaaattattctc-tatctgaattttatctaacaatgtgtttcag
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AAGCTACTCCCAAGGGTGTGTTAAAGCTAATGAAGGCAGACAATTTGACCATTTATCATGTTAAAAGTCACCTTCAGgtctgttagttgtccctattgcatgatatttttgtgaaaa----aaaattattcttatcttttcattttgagttaatttattttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51592708|gb|CV071854.1|CV071854
EST:     TAATGAAGGCAGACAATTTGACCATTTATCATGTAAAAAGTCATCTTCAG                         AAATACAGAACAGCTAGATACAGACCAGAGTTATCTGAAG
genomic: TAATGAAGGCAGACAATTTGACCATTTATCATGTAAAAAGTCATCTTCAGgtctgatatc ... tgtgtttcagAAATACAGAACAGCTAGATACAGACCAGAGTTATCTGAAG
EST: gi|211106908|gb|FK992455.1|FK992455
EST:     TAATGAAGGCAGACAATTTGACCATTTATCATGTAAAAAGTCATCTTCAG                         AAATACAGAACAGCTAGATACAGACCAGAGTTATCTGAAG
genomic: TAATGAAGGCAGACAATTTGACCATTTATCATGTAAAAAGTCATCTTCAGgtctgatatc ... tgtgtttcagAAATACAGAACAGCTAGATACAGACCAGAGTTATCTGAAG
EST: gi|13149966|gb|BG320288.1|BG320288
EST:     TAATG-ARGCAGACAA-TTGACCATYTATCATGTAAAAAGTCATCTTCAG                         AAATACAGAACAGCTAGATACAGMCCAGAGTTATCTGAAG
genomic: TAATGAAGGCAGACAATTTGACCATTTATCATGTAAAAAGTCATCTTCAGgtctgatatc ... tgtgtttcagAAATACAGAACAGCTAGATACAGACCAGAGTTATCTGAAG