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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGCTACAGGCATTAGCTTTACATGCGATTTGAGTGACAATATTGCAGCACCATGGCCATCCTCATCTTCTGTCCAATCATTGTCACTTTGTGCTCCAGgtaagagcaggcattctaatttgggtcacaaaaacaatacactacaattttcgaaataacaacatgattctcactatttttaacatgttgagtactagtttttgtctaatcacattggcatcctcttttggattcag

Basic information

species Zea mays
transcript GRMZM2G162251_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G162251_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os10g38980.3 (Oryza sativa), 5'ss of exon 6
AACGCTACAGGCATTAGCTTTACATGCGATTTGAGTGACAATATTGCAGCACCATGGCCATCCTCATCTTCTGTCCAATCATTGTCACTTTGTGCTCCAGgtaagagcaggcattctaatttgggtcacaaaaacaatacactacaattttcgaaataa--caacatgattctcactatttttaacatgttgagtactagtttttgtctaatcacattggcatcctcttttggattcag
|| ||||| |||||||| |||||||| |||||||||||||| |||||||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||    | ||||  |  ||  |    | ||| || |     |    | | | | ||    ||||||| | | ||  |||                                                         
AATGCTACGGGCATTAGTTTTACATGTGATTTGAGTGACAACATTGCAGCGCCATGGCCATCATCATCATCTGTTCAATCCTTGTCACTTTGTGCTCCAGgtaaggt--gacatttcaggtttagcactagaaaaaacagtgagcttcgtacaacacaaattgacatgataccc-ctcctttggtttcag-------------------------------------------------

upper sequence: GRMZM2G162251_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA09G36130.1 (Glycine max), 5'ss of exon 5
AACGCTACAGGCATTAGCTTTACATGCGATTTGAGTGACAATATTGCAGCACCATGGCCATCCTCATCTTCTG---TCCAATCATTGTCACTTTGTGCTCCAGgtaagagcaggcattctaatttgggtcacaaaaacaatacactacaattttcgaaataacaacatgattctcactatttt-taacatgttgagtactagtttttgtctaatcacattggcatcctcttttggattcag
    |  ||||| ||||||||||||| ||||||||||| || ||||| || || ||||| || ||||| |||    |   |||  ||||||| ||||| || |||| | |   | |  | ||||||  |       |        |||  ||||   | | |  |  |   | | |  || ||  || ||  ||  | |   |  ||  ||   |   |    ||  | ||||        
---TCATCAGGCTTTAGCTTTACATGTGATTTGAGTGATAACATTGCTGCGCCCTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTGgtatgtgtttgga--caaatttgctttctcttgatcgctgcttac--tttttttattcaggatgttggtattatgatattacaaaatactgtttgcatatgcttaact---cttgtctctatttttttttcag-----

upper sequence: GRMZM2G162251_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA12G01200.1 (Glycine max), 5'ss of exon 6
AACGCTACAGGCATTAGCTTTACATGCGATTTGAGTGACAATATTGCAGCACCATGGCCATCCTCATCTTCTG---TCCAATCATTGTCACTTTGTGCTCCAGgtaagagcaggcattctaatttgggtcacaaaaacaatacactacaattttcgaaataacaacatgattctcactatttt-taacatgttgagtactagtttttgtctaatcacattggcatcctcttttggattcag
    |  ||||| ||||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| |||    |   |||  ||||||| ||||| || |||| | |   | |  | || |||| |       |        |||  ||||  || |    |  |   | | |  ||  |  || ||  ||  | |   |  ||| ||  ||   |     |  | ||||| |     
---TCATCAGGCTTTAGCTTTACATGTGATTTGAGTGATAACATTGCTGCACCCTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTGgtatgtgtttgga--caaagttggtttctcttgatcgctgcttac--ttttttaattccggatgttggtattatgatagtacaatatactgtttgcatttgcttgacttgtc---tctatttttttttttgcag----

upper sequence: GRMZM2G162251_T02 (Zea mays), 5'ss of exon 5
lower sequence: AT2G30700.1 (Arabidopsis thaliana), 5'ss of exon 6
AACGCTACAGGCATTAGCTTTACATGCGATTTGAGTGACAATATTGCAGCACCATGGCCATCCTCATCTTCTGTCCAATCATTGTCACTTTGTGCTCCAGgtaagagcaggcattctaatttgggtcacaaaaacaatacactacaattttcgaaataacaacatgattctcactatttttaacatgttgagtactagtttttgtctaatcacattggcatcctcttttggattcag--
||| |  |||||   ||||||||||| |||||||  ||||| ||||| || ||||||||||| ||||| ||  |    || ||||| || |||||||| |||||   |     |    |  ||          ||       |  |  || |  || |  || | |            |||||    |||   |  |  |||||  | |||  |||   ||  | ||||  ||      
AACACATCAGGCTACAGCTTTACATGTGATTTGACAGACAACATTGCTGCTCCATGGCCATCTTCATCGTCAATGTCTTCTTTGTCTCTATGTGCTCCTGgtaatcacttctctctctacctgttctcttcttactcattgttggagcttccagaaaactaaaaag------------tttaa---attgcaaaaaaagttttgctttatcttattca-attttattttaaatatgcag

upper sequence: GRMZM2G162251_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv05s0094g00050.t01 (Vitis vinifera), 5'ss of exon 4
AACGCTACAGGCATTAGCTTTACATGCGATTTGAGTGACAATATTGCAGCACCATGGCCATCCTCATCTTCTGTCCAATCATTGTCACTTTGTGCTCCAGgtaagag-----caggcattctaatttgggtcacaaaaacaatacactacaattttcgaaataacaacatgattctcactatttttaacatgttg--agtactagtttttgtctaatcacattggc-----atcctcttttggattcag---
||  | |||||| | |||||||| || || |||||||| ||||||||||| |||||||| || ||  | ||  |    || ||||| ||||||||||| |||||  |     ||   | || | ||| | |||      || |    |   || || ||   || ||  | ||  |   ||| ||| |  || |   | ||| ||||| | || |   |||||        |||   | |   | |  |   
AATTCAACAGGCTTCAGCTTTACGTGTGACTTGAGTGATAATATTGCAGCTCCATGGCCTTCATCGACCTCAATTTCGTCCTTGTCTCTTTGTGCTCCGGgtaactgattgacaaagaatc-atttttgttcatttcctca-tttgttgttatattagatcaaataaacttatggtttttatctttgaagtgctatcattacaagtttgtttcaatgtacatttcttactgatcacttatcaaaatttgcag