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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGATCTAGTTTACGGAGAGGCTTCTGCATTATAACACTTGTCTGTATTTCCAGTATGCCCGCATTATTCAGAAACTTGGTTTTCCAGCTAAGTTTAAGgtaactttttcatacttgtgtacattgacctgttctttgaacaatatgtacatcagttgctaagttgctgttctaagccag

Basic information

species Zea mays
transcript GRMZM2G161418_T06
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G161418_T06 (Zea mays), 5'ss of exon 4
lower sequence: Vv06s0004g00180.t01 (Vitis vinifera), 5'ss of exon 6
----TTGGATCTAGTTTACGGAGAGGCTTCTGCATTATAACACTTGTCTGTATTTCCAGTATGCCCGCATTATTCAGAAACTTGGTTTTCCAGCTAAGTTTAAGgtaactttttcatacttgtgtacattgacctgttctttgaacaatatgtacatcagttgctaagttgctgttctaagccag
     | ||  || |     |   || ||      || |      || | |||| ||| ||   |    |   || |  |  | |    |||  |    ||| | ||   || ||   ||||| |   |    ||||||||      ||||  ||  | |||  | | |    | | ||      
TATGCTCGAATTATTCAGAAGCTCGGTTTTCCAGCTAAATTTAAGgtatttatt-ccattacatctctctctctctgtgatgtag----ccaatttctgttatgctattcttctc---cttgtttttttgccactgttctt-attttatattgactgctgttttttattgtgggatgtag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32914682|gb|CF019494.1|CF019494
EST:     GCCCGCATTATTCAGAAACTTGGTTTTCCAGCTAAGTTTAAG                         GATTTTAAGATTCAGAATATTGTTGGCTCTTGTGATGTCAAGTTTCCAATT
genomic: GCCCGCATTATTCAGAAACTTGGTTTTCCAGCTAAGTTTAAGgtaacttttt ... tctaagccagGATTTTAAGATTCAGAATATTGTTGGCTCTTGTGATGTCAAGTTTCCAATT