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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGAATCTAAGCCCTCTGAACAGGTTTACAAAGGAATCATGGATTGTGTGAAAACAATATACAGACAAAATGGATTGAAAGGCATATACCGTGGCATGGgtatgcatgtactgcatctcactgtttttatcaatgccagtttctgatatactcctggcaattaactaatttttttttcttcag

Basic information

species Zea mays
transcript GRMZM2G161299_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G161299_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g13300.2 (Oryza sativa), 5'ss of exon 4
AGAGAATCTAAGCCCTCTGAACAGGTTTACAAAGGAATCATGGATTGTGTGAAAACAATATACAGACAAAATGGATTGAAAGGCATATACCGTGGCATGGgtatgcatgtactgcatctcactgtttttatcaatgccagtttctgatatactcctggcaattaactaatttttttttcttcag
||||||| ||||||||||||||||||||| ||||| ||| | |||||||| ||||||||||||||||||||||| || | |||| |||| |||||||||||||||| | |  ||||| ||| | ||||  | | |  ||  | ||||||   |      ||  ||  | ||  ||||||     
AGAGAATATAAGCCCTCTGAACAGGTTTATAAAGGGATCCTTGATTGTGTCAAAACAATATACAGACAAAATGGGTTAAGAGGCCTATATCGTGGCATGGgtatgcttattttgcatttca-tattttgctaatttacaactactgatactattgctataacaaagaatttggtttttcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67010867|gb|CO439616.1|CO439616
EST:     GAAAACAATATACAGACAAAATGGATTGAAAGGCATATACCGTGGCATGG                         CTCCTTCACTATATGGAATCTTCCCTTACTCTGGTCTTAAATTCTACTTCT
genomic: GAAAACAATATACAGACAAAATGGATTGAAAGGCATATACCGTGGCATGGgtatgcatgt ... ttttcttcagCTCCTTCACTATATGGAATCTTCCCTTACTCTGGTCTTAAATTCTACTTCT
EST: gi|76294059|gb|DV033627.1|DV033627
EST:     TTGAAAGGCATATACCGTGGCATGG                         CTCCTTCACTATATGGAATCTTCCCTTACTCTGGTCTTAAATTCTACTTCT
genomic: TTGAAAGGCATATACCGTGGCATGGgtatgcatgt ... ttttcttcagCTCCTTCACTATATGGAATCTTCCCTTACTCTGGTCTTAAATTCTACTTCT
EST: gi|71442969|gb|DR824019.1|DR824019
EST:     GAAAACAATATACAGACAAAATGGATTGAAAGGCATATACCGTGGCATGG                         CTCCTTCACTATATGGAATCTTCCCTTACTCTGGTCTTAAATTCTACTTCT
genomic: GAAAACAATATACAGACAAAATGGATTGAAAGGCATATACCGTGGCATGGgtatgcatgt ... ttttcttcagCTCCTTCACTATATGGAATCTTCCCTTACTCTGGTCTTAAATTCTACTTCT
EST: gi|76294060|gb|DV033628.1|DV033628
EST:     GAAAACAATATACAGACAAAATGGATTGAAAGGCATATACCGTGGCATGG                         CTCCTTCACTATATGGAATCTTCCCTTACTCTGGTCTTAAATTCTACTTCT
genomic: GAAAACAATATACAGACAAAATGGATTGAAAGGCATATACCGTGGCATGGgtatgcatgt ... ttttcttcagCTCCTTCACTATATGGAATCTTCCCTTACTCTGGTCTTAAATTCTACTTCT