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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAAGAGCAATTTTAACATAGTAAATGACGATGAGGTTGAACTTGCTCATTCTGGACAATATCTGTTGAATCTTCCCATTAAAGTTGATGAATCAAAGgtgaatgctgtttccgtgcaaaatgtcttgttatacaaaattcactaaattttgatgtgaaatcccaatttggtcttttccgtgagcag

Basic information

species Zea mays
transcript GRMZM2G161168_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G161168_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g70390.1 (Oryza sativa), 5'ss of exon 4
GGAAAAGAGCAATTTTAACATAGTAAATGACGATGAGGTTGAACTTGCTCATTCTGGACAATATCTGTTGAATCTTCCCATTAAAGTTGATGAATCAAAGgtgaatgctgtttccgtgcaaaatgtcttgttatacaaaattcactaaattttgatgtgaaatcccaat-ttggtcttttccgtgagcag
| |||| |||||||| |||||| ||   || ||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| ||     | ||| | ||   ||| |  | ||  |||| ||| |  ||||     |   ||   ||  || || |||| |  | ||||
GCAAAAAAGCAATTTCAACATATTATCAGATGATGAGGTTGAGCTTGCTCATTCTGGACAATATCTGCTGAATCTTCCCATCAAAGTTGATGAAGCAAAGgttaacatcctctccctccaggctgtgtcctaatctaaaaatcattggatttgacaatattattgtaaaatttgttttttactggtgcag

upper sequence: GRMZM2G161168_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA19G27800.1 (Glycine max), 5'ss of exon 4
GGAAAAGAGCAATTTTAACATAGTAAATGACGATGAGGTTGAACTTGCTCATTCTGGACAATATCTGTTGAATCTTCCCATTAAAGTTGATGAATCAAAGgtg----------aatgctgtttccgtgcaaaatgtcttgttatacaaaattcactaaattttgatgtgaaatcccaat-ttggtcttttccgtgagcag--
|||||||||||| || || ||||| | ||| |||||| ||||  |||| ||||| || ||||||||  | |||||||||||||  ||||||||||| |||||           ||||||  ||   || ||||||     ||  | |   || | |   |  || |   |  | |  || |  || ||||  |         
GGAAAAGAGCAACTTCAAGATAGTGACTGATGATGAGATTGATGTTGCACATTCAGGCCAATATCTTCTAAATCTTCCCATTACTGTTGATGAATCTAAGgtttgtgcataataatgctcctttaatggaaaatggtaccttg-agatgcttgattt--tgctgctaatagttgctgatgtctgtattttttgctgatgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93015466|gb|EB640986.1|EB640986
EST:     ATTCTGGACAATATCTGTTGAATCTTCCCATTAAAGTTGATGAATCAAAG                         TTAGATGACAAACTTCTGTCGAAGTATTTTAAGGAGCACCGTCATGAAAAC
genomic: ATTCTGGACAATATCTGTTGAATCTTCCCATTAAAGTTGATGAATCAAAGgtgaatgctg ... ccgtgagcagTTAGATGACAAACTTCTGTCGAAGTATTTTAAGGAGCACCGTCATGAAAAC