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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTAATGGTGGGACCTTACGGAAGGTTTCGGTAACAGTTGGTGAAAATGGGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAAgtgagtttatttatgctgcttgtcgacacgtgttctgctacttgtttgatcctgcatggttgtagtggggtgtggttcattacttgattggttgtgtggt...

Basic information

species Zea mays
transcript GRMZM2G160996_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G160996_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g02360.1 (Oryza sativa), 5'ss of exon 3
TGGTAATGGTGGGACCTTACGGAAGGTTTCGGTAACAGTTGGTGAAAATGGGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAAgtgagttta--tttatgctgcttgtcgacacgtgttc-tgctacttgtttgatcctgcatggttgtagtggggtgtggttcattacttgattggttgtgtggt
||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||| |||||||||||||||||||||||| ||  || |  ||   ||  |       | | ||   | |   |  |  |   |  |   | | |  ||    |  |  |   ||||||| |||   
TGGCAACGGTGGCACCTTACGGAAGGTTTCGGTAACAGTTGGTGAAAATGGGATCACTATGGCCTCACGACGTCCGCGTGTGACACTTCGAGGCACAAAAgtgagtgtagtttcaaacttaatgctgtttttcttccatgtggcctagatacttttatgttttgtcacttgcctgattattgtggcaatattggtt-tgtt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67023296|gb|CO452045.1|CO452045
EST:     GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAA                         TTCTCCCTCCCAATGCCCCAAGGTGGAAGAGATGCAATAACTAAGAACCCC
genomic: GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAAgtgagtttat ... ttgcttgcagTTCTCCCTCCCAATGCCCCAAGGTGGAAGAGATGCAATAACTAAGAACCCC
EST: gi|211203702|gb|FL472025.1|FL472025
EST:     GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAA                         TTCTCCCTCCCAATGCCCCAAGGTGGAAGAGATGCAATAACTAAGAACCCC
genomic: GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAAgtgagtttat ... ttgcttgcagTTCTCCCTCCCAATGCCCCAAGGTGGAAGAGATGCAATAACTAAGAACCCC
EST: gi|211260639|gb|FL352273.1|FL352273
EST:     GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAA                         TTCTCCCTCCCAATGCCCCAAGSSTGGAAGAGATGCAATAACTAAGAACCC
genomic: GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAAgtgagtttat ... ttgcttgcagTTCTCCCTCCCAATGCCCCAAGG-TGGAAGAGATGCAATAACTAAGAACCC
EST: gi|166456136|gb|EG303602.1|EG303602
EST:     GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAA                         A
genomic: GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAAgtgagtttat ... ttgcttgcag-
EST: gi|166456136|gb|EG303602.1|EG303602
EST:     GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAA                         A
genomic: GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAAgtgagtttat ... ttgcttgcag-
EST: gi|60355783|gb|DN222756.1|DN222756
EST:     GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAA                         TTCTCCCTCCCAATGCCCCAAGGTGGAAGAGATGCAATAACTAAGAACCCC
genomic: GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAAgtgagtttat ... ttgcttgcagTTCTCCCTCCCAATGCCCCAAGGTGGAAGAGATGCAATAACTAAGAACCCC
EST: gi|60394073|gb|DN226943.1|DN226943
EST:     GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAA                         TTCTCCCTCCCAATGCCCCAAGGTGGAAGAGATGCAATAACTAAGAACCCC
genomic: GGATCACTATGGCTTCACGGCGCCCACGTGTTACACTTCGAGGCACAAAAgtgagtttat ... ttgcttgcagTTCTCCCTCCCAATGCCCCAAGGTGGAAGAGATGCAATAACTAAGAACCCC