1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATGGAGAGAGGCTCAATTATATGGTGATATCCAATTGATGCCCTTCGTTGACTACTATACTTTGATCACTTTGAAGACCATATCAATTTGCATTTTCGGAgtatgttttctttttcaggctttcacctcatggaagcttctttagttttgacttatggagtttgaaccatgtcaccactaaggccgactctagcagatta...
species | Zea mays |
transcript | GRMZM2G160958_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACTACTATACTTTGATCACTTTGAAGACCATATCAATTTGCATTTTCGGA ACAAAAATTGTTCCTGCAAAGTACATCATGAAAACGGATGACGATGCTTTTEST: gi|37398767|gb|CF636701.1|CF636701
genomic: ACTACTATACTTTGATCACTTTGAAGACCATATCAATTTGCATTTTCGGAgtatgttttc ... tattttgcagACAAAAATTGTTCCTGCAAAGTACATCATGAAAACGGATGACGATGCTTTT
EST: ACTACTATACTTTGATCACTTTGAAGACCATATCAATTTGCATTTTCGGA ACAAAAATTGTTCCTGCAAAGTACATCATGAAAACGGATGACGATGCTTTTEST: gi|61119151|gb|DN560112.1|DN560112
genomic: ACTACTATACTTTGATCACTTTGAAGACCATATCAATTTGCATTTTCGGAgtatgttttc ... tattttgcagACAAAAATTGTTCCTGCAAAGTACATCATGAAAACGGATGACGATGCTTTT
EST: ACTACTATACTTTGATCACTTTGAAGACCATATCAATTTGCATTTTCGGA ACAAAAATTGTTCCTGCAAAGTACATCATGAAAACGGATGACGATGCTTTTEST: gi|22546267|gb|BU098578.1|BU098578
genomic: ACTACTATACTTTGATCACTTTGAAGACCATATCAATTTGCATTTTCGGAgtatgttttc ... tattttgcagACAAAAATTGTTCCTGCAAAGTACATCATGAAAACGGATGACGATGCTTTT
EST: ACTACTATACTTTGATCACTTTGAAGACCATATCAATTTGCATTTTCGGA ACAAAAATTGTTCCTGCAAAGTACATCATGAAAACGGATGACGATGCTTTTEST: gi|149090595|gb|EE179908.2|EE179908
genomic: ACTACTATACTTTGATCACTTTGAAGACCATATCAATTTGCATTTTCGGAgtatgttttc ... tattttgcagACAAAAATTGTTCCTGCAAAGTACATCATGAAAACGGATGACGATGCTTTT
EST: ACTACTATACTTTGATCACTTTGAAGACCATATCAATTTGCATTTTCGGA ACAAAAATTGTTCCTGCAAAGTACATCATGAAAACGGATGACGATGCTTTTEST: gi|20301227|gb|BQ164170.1|BQ164170
genomic: ACTACTATACTTTGATCACTTTGAAGACCATATCAATTTGCATTTTCGGAgtatgttttc ... tattttgcagACAAAAATTGTTCCTGCAAAGTACATCATGAAAACGGATGACGATGCTTTT
EST: ACTACTATACTTTGATCACTTTGAAGACCATATCAATTTGCATTTTCGGA ACAAAAATTGCTCCTGCAAAGTACATCATGAAAACGGATGACGATGCTCTTEST: gi|78108033|gb|DV526451.1|DV526451
genomic: ACTACTATACTTTGATCACTTTGAAGACCATATCAATTTGCATTTTCGGAgtatgttttc ... tattttgcagACAAAAATTGTTCCTGCAAAGTACATCATGAAAACGGATGACGATGCTTTT
EST: ACTACTATACTTTGATCACTTTGAAGACCATATCAATTTGCATTTTCGGA CCAAAAATTGTTCCTGCAAAGTACATCATGAAAACGGATGACGATGCTTTTEST: gi|32912724|gb|CF017536.1|CF017536
genomic: ACTACTATACTTTGATCACTTTGAAGACCATATCAATTTGCATTTTCGGAgtatgttttc ... tattttgcagACAAAAATTGTTCCTGCAAAGTACATCATGAAAACGGATGACGATGCTTTT
EST: ACTACTATACTTTGATCACTTTGAAGACCATATCAATTTGCATTTTCGGA ACAAAAATTGTTCCTGCAAAGTACATCATGAAAACGGATGACGATGCTTTTEST: gi|71328875|gb|DR801120.1|DR801120
genomic: ACTACTATACTTTGATCACTTTGAAGACCATATCAATTTGCATTTTCGGAgtatgttttc ... tattttgcagACAAAAATTGTTCCTGCAAAGTACATCATGAAAACGGATGACGATGCTTTT
EST: ATTTGCATTTTCGGA ACAAAAATTGTTCCTGCAAAGTACATCATGAAAACGGATGACGATGCTTTTEST: gi|26558871|gb|CA831106.1|CA831106
genomic: ATTTGCATTTTCGGAgtatgttttc ... tattttgcagACAAAAATTGTTCCTGCAAAGTACATCATGAAAACGGATGACGATGCTTTT
EST: ACTACTATACTTTGATCACTTTGAAGACCATATCAATTTGCATTTTCGGA ACAAAAATTGTTCCTGCAAAGTACATCATGAAAACGGATGACGATGCTTTT
genomic: ACTACTATACTTTGATCACTTTGAAGACCATATCAATTTGCATTTTCGGAgtatgttttc ... tattttgcagACAAAAATTGTTCCTGCAAAGTACATCATGAAAACGGATGACGATGCTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGAGAGAGGCTCAATTATATGGTGATATCCAATTGATGCCCTTCGTTGACTACTATACTTTGATCACTTTGAAGACCATATCAATTTGCATTTTCGGAgtatgttttctttttcaggctttcacctcatggaagcttctttagttttgacttatggagtttgaaccatgtcaccactaaggccgactctagcagatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA