1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TACCGGTAACCATCTGAAAGGGTCACGCCCACTTCTTACATTTTCTACAAATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAGgtatgtaactggtttcacatgttatgccatacctacatatggctaagcattttaacaagttgatgaactgcacttatctgtccaattatctagatttgtc...
species | Zea mays |
transcript | GRMZM2G160458_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAG ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTTCATGACCATEST: gi|148946148|gb|EC891442.2|EC891442
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAGgtatgtaact ... acttgtccagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAG ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATEST: gi|148946147|gb|EC891441.2|EC891441
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAGgtatgtaact ... acttgtccagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAATTCAG ATATTTGTTACTCTTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATEST: gi|148996317|gb|EE035601.2|EE035601
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAGgtatgtaact ... acttgtccagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAG ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATEST: gi|149070865|gb|EE159274.2|EE159274
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAGgtatgtaact ... acttgtccagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAG ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATEST: gi|50323762|gb|CO518888.1|CO518888
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAGgtatgtaact ... acttgtccagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAG ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATEST: gi|110196089|gb|EC877986.1|EC877986
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAGgtatgtaact ... acttgtccagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: GGAAGCTTGTGAAGGAAATGATAACTCAG ATATTTGTTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATEST: gi|71429925|gb|DR810975.1|DR810975
genomic: GGAAGCTTGTGAAGGAAATGATAACTCAGgtatgtaact ... acttgtccagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAG ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATEST: gi|71301915|gb|DR787034.1|DR787034
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAGgtatgtaact ... acttgtccagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAG ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATEST: gi|50326773|gb|CO521899.1|CO521899
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAGgtatgtaact ... acttgtccagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAG ATATTTGCTACTCCTAAAGATCACCEST: gi|78089924|gb|DV518298.1|DV518298
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAGgtatgtaact ... acttgtccagATATTTGCTACTCCTAAAGATCACC
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAG ATATTTGCTACTCCTAAAGATCACCEST: gi|60347622|gb|DN214595.1|DN214595
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAGgtatgtaact ... acttgtccagATATTTGCTACTCCTAAAGATCACC
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAG ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATEST: gi|71429926|gb|DR810976.1|DR810976
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAGgtatgtaact ... acttgtccagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAG ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATEST: gi|78089923|gb|DV518297.1|DV518297
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAGgtatgtaact ... acttgtccagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAG ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATEST: gi|211002651|gb|FL371731.1|FL371731
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAGgtatgtaact ... acttgtccagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAG ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATEST: gi|149070866|gb|EE159275.2|EE159275
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAGgtatgtaact ... acttgtccagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAGATGATAACTCAG ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATEST: gi|32842309|gb|CD981990.1|CD981990
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAGgtatgtaact ... acttgtccagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAG ATATTTGCTAGTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGEST: gi|50332851|gb|CO527977.1|CO527977
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAGgtatgtaact ... acttgtccagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATG
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAG ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATEST: gi|71426064|gb|DR807114.1|DR807114
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAGgtatgtaact ... acttgtccagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAG ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATEST: gi|86469691|gb|DY236061.1|DY236061
genomic: ATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAGgtatgtaact ... acttgtccagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
EST: TTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAG ATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
genomic: TTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAGgtatgtaact ... acttgtccagATATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACCGGTAACCATCTGAAAGGGTCACGCCCACTTCTTACATTTTCTACAAATTTTGATGAGCAACCTCATTGGAAGCTTGTGAAGGAAATGATAACTCAGgtatgtaactggtttcacatgttatgccatacctacatatggctaagcattttaacaagttgatgaactgcacttatctgtccaattatctagatttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA