Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATTGCTGGGTTTTGGTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatccaaacaacttctagagagaaccttgcttttcacccctcctgaaatgtatctaattggctgacactgggtcgtcttctcttctgcaaaaaaacag

Basic information

species Zea mays
transcript GRMZM2G159388_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G159388_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g12650.1 (Oryza sativa), 5'ss of exon 4
GTTATTGCTGGGTTTTGGTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatccaaacaacttctagagagaaccttgcttttcacccctcctgaaatgtatctaattggctgacactgggtcgtct-tctcttctgcaaaaaaacag
|| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | |     | |||| | || ||||  ||  | || |   |  ||  ||  |||  | ||| || |   | | || | |   |||| ||| ||| |    
GTGATTGCTGGCCTTTGGTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTGGTTTATATTGgtaagtggtttgggctactt-tggacagaa--ttattctttattacctcttcaaactatagatttgactaatgttagatcttttgcttcttatgccaaacag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60395326|gb|DN228195.1|DN228195
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|211451838|gb|FL381448.1|FL381448
EST:     TGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTATGAGAAGTACGAGGATC
genomic: TGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|37377979|gb|CF625638.1|CF625638
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTATGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|16917536|gb|BM073329.1|BM073329
EST:     GCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
genomic: GCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|60396291|gb|DN229160.1|DN229160
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|83278714|gb|DV942722.1|DV942722
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|37377329|gb|CF625261.1|CF625261
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTATGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|71319886|gb|DR796701.1|DR796701
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|213170374|gb|FM192501.1|FM192501
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTATGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|16927724|gb|BM080793.1|BM080793
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|32913287|gb|CF018099.1|CF018099
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTATGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|50330316|gb|CO525442.1|CO525442
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|76915379|gb|DV165957.1|DV165957
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|29576879|gb|CB616991.1|CB616991
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|113701183|gb|EE678687.1|EE678687
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTATGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|211035915|gb|FK990122.1|FK990122
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTATGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|76915381|gb|DV165958.1|DV165958
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|47961444|gb|CN844153.1|CN844153
EST:     GTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTATGAGAAGTACGAGGATC
genomic: GTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|87156881|gb|DY401670.1|DY401670
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTATGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|60400948|gb|DN233755.1|DN233755
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|29945717|gb|CB815783.1|CB815783
EST:     GCTTTCTGTTCTTGGAAGCTGCTCCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|32911558|gb|CF016370.1|CF016370
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTATGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|60345750|gb|DN212723.1|DN212723
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|211035616|gb|FL437920.1|FL437920
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTATGAGAAGTACGAAGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|50330315|gb|CO525441.1|CO525441
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|32805271|gb|CD957507.1|CD957507
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTATGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|60395367|gb|DN228236.1|DN228236
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTAC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTAC
EST: gi|4886126|gb|AI677246.1|AI677246
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTATGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|60396494|gb|DN229363.1|DN229363
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|29544868|gb|CB605476.1|CB605476
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|71319888|gb|DR796702.1|DR796702
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|86470074|gb|DY236444.1|DY236444
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|37398603|gb|CF636616.1|CF636616
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTATGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|5928921|gb|AW056213.1|AW056213
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTATGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|60353543|gb|DN220516.1|DN220516
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTATGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|78088122|gb|DV516515.1|DV516515
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|60359185|gb|DN226158.1|DN226158
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|60339120|gb|DN206093.1|DN206093
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTATGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|67017360|gb|CO446109.1|CO446109
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTATGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC
EST: gi|211016994|gb|FL168513.1|FL168513
EST:     GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTG                         TCTTTGTGGTGCTGCACACAGTACCTGTCCTGTATGAGAAGTACGAGGATC
genomic: GCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 312

GTTATTGCTGGGTTTTGGTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATCAGATTGACTCGTATGGCGAGAAGGGGTGGGTTGAAATTAAGAAGCAGTA


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 161

GTTATTGCTGGGTTTTGGTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATCAGATTGACTCGTATGGCGAGAAGGGGTGGGTTGAAATTAAGAAGCAGTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 242

GTTATTGCTGGGTTTTGGTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATCAGATTGACTCGTATGGCGAGAAGGGGTGGGTTGAAATTAAGAAGCAGTA


Block sizes: 49 (upstream exon), 37 (downstream exon)
Score: 98

GTTATTGCTGGGTTTTGGTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatc ... aaaaaaacagTCTTTGTGGTGCTGCACACAGTACCTGTCCTGTACGAGAAGTACGAGGATCAGATTGACTCGTATGGCGAGAAGGGGTGGGTTGAAATTAAGAAGCAGTA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTATTGCTGGGTTTTGGTTGCTTTCTGTTCTTGGAAGCTGCTGCAACTTCTTGACCTTAGTTTACATTGgtaagggatccaaacaacttctagagagaaccttgcttttcacccctcctgaaatgtatctaattggctgacactgggtcgtcttctcttctgcaaaaaaacag

- - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - -  TGCTGC