1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTGGTGTGGGCCGTGCCGTGTCATCGCACCTGTCTACGCCGAAATGTCGCAGACGTACCCTCAGCTCATGTTCCTGACGATCGATGTTGATGACTTGATGgtaattaagcggatgtttctctcgggaccttttatccttacgcgttattacgactactacataaggcccacagaaaacgaataatgttttgcacatcaccagggagctagctgcgttctagagtcatcatagaccgactgacgatcctccctcgatttttcctcatgccacacag
species | Zea mays |
transcript | GRMZM2G159145_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGACGTACCCTCAGCTCATGTTCCTGACGATCGATGTTGATGACTTGATG GAGCTCAGCTCGTCGTGGGACATCCGCGCGACCCCGACCTTCTTCTTCCTCEST: gi|211193234|gb|FL445825.1|FL445825
genomic: AGACGTACCCTCAGCTCATGTTCCTGACGATCGATGTTGATGACTTGATGgtaattaagc ... tgccacacagGAGTTCAGCTCGTCGTGGGACATCCGCGCGACCCCGACCTTCTTCTTCCTC
EST: AGACGTACCCTCAGCTCATGTTCCTGACGATCGATGTTGATGACTTGATG GAGTTCAGCTCGTCGTGGGACATCCGCGCGACCCCGACCTTCTTCTTCCTCEST: gi|91878181|gb|EB408138.1|EB408138
genomic: AGACGTACCCTCAGCTCATGTTCCTGACGATCGATGTTGATGACTTGATGgtaattaagc ... tgccacacagGAGTTCAGCTCGTCGTGGGACATCCGCGCGACCCCGACCTTCTTCTTCCTC
EST: AGACGTACCCTCAGCTCATGTTCCTGACGATCGATGTTGATGACTTGATG GAGTTCAGCTCGTCGTGGGACATCCGCGCGACCCCGACCTTCTTTTTCCTCEST: gi|20506687|gb|BQ279300.1|BQ279300
genomic: AGACGTACCCTCAGCTCATGTTCCTGACGATCGATGTTGATGACTTGATGgtaattaagc ... tgccacacagGAGTTCAGCTCGTCGTGGGACATCCGCGCGACCCCGACCTTCTTCTTCCTC
EST: AGACGTACCCTCAGCTCATGTTCCTGACGATCGATGTTGATGACTTGATG GAGTTCAGCTCGTCGTGGGAGCATCCGCGCGACCCCGACCTTCTTCTTCCTEST: gi|60395087|gb|DN227956.1|DN227956
genomic: AGACGTACCCTCAGCTCATGTTCCTGACGATCGATGTTGATGACTTGATGgtaattaagc ... tgccacacagGAGTTCAGCTCGTCGTGGGA-CATCCGCGCGACCCCGACCTTCTTCTTCCT
EST: AGACGTACCCTCAGCTCATGTTCCTGACGATCGATGTTGATGACTTGATG GAGTTCAGCTCGTCGTGGGACATCCGCGCGACCCCGACCTTCTTCTTCCTCEST: gi|91878182|gb|EB408139.1|EB408139
genomic: AGACGTACCCTCAGCTCATGTTCCTGACGATCGATGTTGATGACTTGATGgtaattaagc ... tgccacacagGAGTTCAGCTCGTCGTGGGACATCCGCGCGACCCCGACCTTCTTCTTCCTC
EST: AGACGTACCCTCAGCTCATGTTCCTGACGATCGATGTTGATGACTTGATG GAGTTCAGCTCGTCGTGGGACATCCGCGCGACCCCGACCTTCTTCTTCCTC
genomic: AGACGTACCCTCAGCTCATGTTCCTGACGATCGATGTTGATGACTTGATGgtaattaagc ... tgccacacagGAGTTCAGCTCGTCGTGGGACATCCGCGCGACCCCGACCTTCTTCTTCCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGGTGTGGGCCGTGCCGTGTCATCGCACCTGTCTACGCCGAAATGTCGCAGACGTACCCTCAGCTCATGTTCCTGACGATCGATGTTGATGACTTGATGgtaattaagcggatgtttctctcgggaccttttatccttacgcgttattacgactactacataaggcccacagaaaacgaataatgttttgcacatcaccagggagctagctgcgttctagagtcatcatagaccgactgacgatcctccctcgatttttcctcatgccacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA