1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTCCTGCATCTTCTGATGTTTTTCAAGAAGTTGAGGGAGAAAGTGAAGAAAGAAGACGTGCTAGGTTAGAACGTCATCAGAGGACTCGTGAACGAGCGgtaatgttctgcgattgattttaggttacaaggaaacaaatgtttattatcacatgtgaaataagtgttattgcgtatgatctaggttattcatatgttgtatcagtctaccttcccctgttataaagaaataatagccactccattctcacttctggatgtggtttatatatctccag
species | Zea mays |
transcript | GRMZM2G158872_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAAGAAGACGTGCTAGGTTAGAACGTCATCAGAGGACTCGTGAACGAGCG GCAAAAGCTCTGGCTGAGAAGAATGAACGTGATATGCAAGTTCAGAGGGAGEST: gi|5847361|gb|AW000440.1|AW000440
genomic: AAAGAAGACGTGCTAGGTTAGAACGTCATCAGAGGACTCGTGAACGAGCGgtaatgttct ... atatctccagGCAAAAGCTCTGGCTGAGAAGAATGAACGTGATATGCAAGTTCAGAGGGAG
EST: AAAGAAGACGTGCTAGGTTAGAACGTCATCAGAGGACTCGTGAACGAGCG GCAAAAGCTCTGGCTGAGAAGAATGAACGTGATATGCAAGTTCAGAGGGAGEST: gi|5860429|gb|AW011651.1|AW011651
genomic: AAAGAAGACGTGCTAGGTTAGAACGTCATCAGAGGACTCGTGAACGAGCGgtaatgttct ... atatctccagGCAAAAGCTCTGGCTGAGAAGAATGAACGTGATATGCAAGTTCAGAGGGAG
EST: AAAGAAGACGTGCTAGGTTAGAACGTCATCAGATGACTCGTGAACGAGCG GCAAAAGCTCTGGCTGAGAAGAATGAACGTGATATGCAAGTTCAGAGGGAGEST: gi|5325205|gb|AI783396.1|AI783396
genomic: AAAGAAGACGTGCTAGGTTAGAACGTCATCAGAGGACTCGTGAACGAGCGgtaatgttct ... atatctccagGCAAAAGCTCTGGCTGAGAAGAATGAACGTGATATGCAAGTTCAGAGGGAG
EST: AAAGAAGACGTGCTAGGTTAGAACGTCATCAGAGGACTCGTGAACGAGCG GCAAAAGCTCTGGCTGAGAAGAATGAACGTGATATGCAAGTTCAGAGGGAGEST: gi|5895879|gb|AW037125.1|AW037125
genomic: AAAGAAGACGTGCTAGGTTAGAACGTCATCAGAGGACTCGTGAACGAGCGgtaatgttct ... atatctccagGCAAAAGCTCTGGCTGAGAAGAATGAACGTGATATGCAAGTTCAGAGGGAG
EST: AAAGAAGACGTGCTAGGTTAGAACGTCATCAGAGGACTCGTGAACGAGCG GCAAAAGCTCTGGCTGAGAAGAATGAACGTGATATGCAAGTTCAGAGGGAG
genomic: AAAGAAGACGTGCTAGGTTAGAACGTCATCAGAGGACTCGTGAACGAGCGgtaatgttct ... atatctccagGCAAAAGCTCTGGCTGAGAAGAATGAACGTGATATGCAAGTTCAGAGGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCTGCATCTTCTGATGTTTTTCAAGAAGTTGAGGGAGAAAGTGAAGAAAGAAGACGTGCTAGGTTAGAACGTCATCAGAGGACTCGTGAACGAGCGgtaatgttctgcgattgattttaggttacaaggaaacaaatgtttattatcacatgtgaaataagtgttattgcgtatgatctaggttattcatatgttgtatcagtctaccttcccctgttataaagaaataatagccactccattctcacttctggatgtggtttatatatctccag
- - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA