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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaaccatcacatatgcatgcatattatttgtctattgaggcattgtcaagtcagatccttttaagcatgtcatgtatatagaattatagataga...

Basic information

species Zea mays
transcript GRMZM2G158766_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158766_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G09570.1 (Glycine max), 5'ss of exon 4
AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaaccatcacatatgcatgcatattatttgtctattgaggcattgtcaagtcagatccttttaagcatgtcatgtatatagaattatagataga---
| || || || |||||||| ||||| || ||||||||||||||  ||||||||||| |||| |||||||| || || || ||||||||| |    |||    |  |   |     | || || ||| | || |  || || |  |  |  ||    ||  ||   | |   | |  | || |    
AAACAACTGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcatatttcatggctataataaatgggtctggctgttgtg-cacttgcatgttaattaatacta--tctgcaattgttttcctacttcatatggcctg

upper sequence: GRMZM2G158766_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA05G26580.1 (Glycine max), 5'ss of exon 4
AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaaccatcacatatgcatgcatattatttgtctattgaggcattgtcaagtcagatccttttaagcatgtcatgtatatagaattatagataga---
| || || || |||||||| ||||| || ||||||||||||||  ||||||||||| |||| |||||||| || || || ||||||||| |    ||     |  |   |     | || || ||| | || |  || || |  || |  ||    ||  ||   | |   | |  | || |    
AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATATgtaagtcatatttcttggctataataaatgggtctggctgttgtg-cacttgcatgttaattcatacta--tctgcaattgttttcctacttcatatggcctg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9951989|gb|BE638572.1|BE638572
EST:     AAGAATTTACTACAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|32840500|gb|CD980181.1|CD980181
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|211059847|gb|FL039111.1|FL039111
EST:     AAGAATTTACTACAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|211059854|gb|FL039118.1|FL039118
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCC
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTG-CCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCC
EST: gi|60338388|gb|DN205361.1|DN205361
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|211053906|gb|FL039090.1|FL039090
EST:     AAGAATTTACTACAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|211053896|gb|FL039080.1|FL039080
EST:     AAGAATTTACTACAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATWAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|3191859|gb|AI001305.1|AI001305
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|211059857|gb|FL039121.1|FL039121
EST:     AAGAATTTACTACAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         AT-GCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|60400305|gb|DN233112.1|DN233112
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|211014719|gb|FL072114.1|FL072114
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATWGCCAACATGATAAGATTTCTGGTG
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTG
EST: gi|211062802|gb|FL039127.1|FL039127
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|211210960|gb|FL000155.1|FL000155
EST:     AAGAATTTACTACAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|32933498|gb|CF038310.1|CF038310
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|211014717|gb|FL072112.1|FL072112
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|37383346|gb|CF628681.1|CF628681
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|213171215|gb|FM188433.1|FM188433
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|33100569|gb|CF060529.1|CF060529
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|211017494|gb|FL072120.1|FL072120
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|6653858|gb|AW267263.1|AW267263
EST:     AAGAATTTACTNCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCACCATGATAAGATTTCTGGTGGATAGCTCCACCAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|32856242|gb|CD995923.1|CD995923
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|211056847|gb|FL039100.1|FL039100
EST:     AAGAATTTACTACAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|211210961|gb|FL000156.1|FL000156
EST:     AAGAATTTACTACAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|211053898|gb|FL039082.1|FL039082
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|211014716|gb|FL072111.1|FL072111
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTNGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCC
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATT-GCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCC
EST: gi|14245602|gb|BG874184.1|BG874184
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|211059846|gb|FL039110.1|FL039110
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|211014721|gb|FL072116.1|FL072116
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|84977205|gb|DW475627.1|DW475627
EST:     AAGAATTTACTACAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|211014722|gb|FL072117.1|FL072117
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|78090061|gb|DV518435.1|DV518435
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|32916548|gb|CF021360.1|CF021360
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGGGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|211053909|gb|FL039093.1|FL039093
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|40335964|gb|CK370034.1|CK370034
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|211117287|gb|FL451396.1|FL451396
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|67015900|gb|CO444649.1|CO444649
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|116813511|gb|EC855962.1|EC855962
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|33100644|gb|CF060604.1|CF060604
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGGTTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|211062803|gb|FL039128.1|FL039128
EST:     AAGAATTTACTACAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|211056851|gb|FL039104.1|FL039104
EST:     AAGAATTTACTACAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|211017495|gb|FL072121.1|FL072121
EST:     AAGAATTTACTACAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACGACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|32865044|gb|CF004726.1|CF004726
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|16927531|gb|BM080600.1|BM080600
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|211056854|gb|FL039107.1|FL039107
EST:     AAGAATTTACTACAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTNGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCC
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATT-GCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCC
EST: gi|9824967|gb|BE575064.1|BE575064
EST:     AAGAATTTACTACAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
EST: gi|37387839|gb|CF631121.1|CF631121
EST:     AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT                         ATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT
genomic: AAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaac ... cgtgtgacagATTGCCAACATGATAAGATTTCTGGTGGATAGCTACAACAAGCCAGTCCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTATgtaagtaaaccatcacatatgcatgcatattatttgtctattgaggcattgtcaagtcagatccttttaagcatgtcatgtatatagaattatagataga

- - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT