1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CAGGGCGGTGACATAGTTAGAGGCGACGGTAAAGGGAGTGAGTCTATATATGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAGgtgtgattgttcagccagtgaactttatcatccagtttgcattttgcctttgttgaagttcatgtgtactcagttacacatttattttcaaggaaaccac...
species | Zea mays |
transcript | GRMZM2G158237_T05 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAG GGGTTGTTGCTATGGCGAATTCTGGACTTGATTTTAATGGATCTCAGTTTTEST: gi|87155387|gb|DY400176.1|DY400176
genomic: TGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAGgtgtgattgt ... tgtcttgcagGGGTTGTTGCTATGGCGAATTCTGGACTTGATTCTAATGGATCTCAGTTTT
EST: TGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAG GGGTTGTTGCTATGGCGAATTCTGGACTTGATTCTAATGGATCTCAGTTTTEST: gi|71434184|gb|DR815234.1|DR815234
genomic: TGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAGgtgtgattgt ... tgtcttgcagGGGTTGTTGCTATGGCGAATTCTGGACTTGATTCTAATGGATCTCAGTTTT
EST: TGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAG GGGTTGTTGTTATGGGGAATTCTGGACTTGATTCTAATGGATCTCAGTTTTEST: gi|30704816|gb|CD058610.1|CD058610
genomic: TGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAGgtgtgattgt ... tgtcttgcagGGGTTGTTGCTATGGCGAATTCTGGACTTGATTCTAATGGATCTCAGTTTT
EST: TGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAG GGGTTGTTGCTATGGCGAATTCTGGACTTGATTCTAATGGATCTCAGTTTTEST: gi|213175357|gb|FM185315.1|FM185315
genomic: TGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAGgtgtgattgt ... tgtcttgcagGGGTTGTTGCTATGGCGAATTCTGGACTTGATTCTAATGGATCTCAGTTTT
EST: TGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAG GGGTTGTTGCTATGGCGAATTCTGGACTTGATTCTAATGGATCTCAGTTTTEST: gi|76922694|gb|DV169125.1|DV169125
genomic: TGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAGgtgtgattgt ... tgtcttgcagGGGTTGTTGCTATGGCGAATTCTGGACTTGATTCTAATGGATCTCAGTTTT
EST: TGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAG GGGTTGTTGCTATGGCGAATTCTGGACTTGATTCTAATGGATCTCAGTTTTEST: gi|78024054|gb|DV492441.1|DV492441
genomic: TGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAGgtgtgattgt ... tgtcttgcagGGGTTGTTGCTATGGCGAATTCTGGACTTGATTCTAATGGATCTCAGTTTT
EST: CCAGATGAGAATTTCACTGTAAAACATACACATCCAG GGGTTGTTGATATGGCGAATTCTGGACTTGATTTTAATGGATTTCAGTTTTEST: gi|76926341|gb|DV170815.1|DV170815
genomic: CCAGATGAGAATTTCACTGTAAAACATACACATCCAGgtgtgattgt ... tgtcttgcagGGGTTGTTGCTATGGCGAATTCTGGACTTGATTCTAATGGATCTCAGTTTT
EST: TGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAG GGGTTGTTGCTATGGCGAATTCTGGACTTGATTCTAATGGATCTCAGTTTTEST: gi|60346388|gb|DN213361.1|DN213361
genomic: TGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAGgtgtgattgt ... tgtcttgcagGGGTTGTTGCTATGGCGAATTCTGGACTTGATTCTAATGGATCTCAGTTTT
EST: TGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAG GGGTTGTTGCTATGGCGAATTCTGGACTTGATTCTAATGGATCTCAGTTTTEST: gi|211328997|gb|FL454093.1|FL454093
genomic: TGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAGgtgtgattgt ... tgtcttgcagGGGTTGTTGCTATGGCGAATTCTGGACTTGATTCTAATGGATCTCAGTTTT
EST: GGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAG GGGTTGTTGCTATGGCGAATTCTGGACTTGATTCTAATGGATCTCAGTTTT
genomic: TGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAGgtgtgattgt ... tgtcttgcagGGGTTGTTGCTATGGCGAATTCTGGACTTGATTCTAATGGATCTCAGTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGGGCGGTGACATAGTTAGAGGCGACGGTAAAGGGAGTGAGTCTATATATGGAGGCATCTTCCCAGATGAGAATTTCACTGTAAAACATACACATCCAGgtgtgattgttcagccagtgaactttatcatccagtttgcattttgcctttgttgaagttcatgtgtactcagttacacatttattttcaaggaaaccac
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG