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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAACTGGCTGGTTACCTTTTCATATTGTTGCACGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAGgtttaacatcgttaacaaaatatcatctcctgttttcctacttgcgatgtagtaggttctcgttttatcttgttcattgtctgagagacaacattgtgaacttgcag

Basic information

species Zea mays
transcript GRMZM2G158097_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158097_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g36062.1 (Oryza sativa), 5'ss of exon 4
GAAACTGGCTGGTTACCTTTTCATATTGTTGCACGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAGgtttaacatcgttaacaaaatatcatctcctgttttcctacttgcgatgtagtaggttctcgttttatcttgttcattgtctgagagacaacattgtgaacttgcag
||||| || ||||||||| | ||| ||||||||||||||||||||| |  | |  | |||||||| ||||||||||| ||||||||||||||| || |    | | |||  | |||||| || |||||    ||                  || |||||   ||||    |||||  ||||| |  |||
GAAACAGGGTGGTTACCTCTGCATGTTGTTGCACGGGATGAGAATGAAACTGTCGTTGGTGTTGTCCCACTTTACCTGAAAAGgtttaacatcattta----acaccatagcatgttttgctgcttgctccata-----------------tttcttcatcagctgaacaccaacaacgtgaattcacag

upper sequence: GRMZM2G158097_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv12s0035g01750.t01 (Vitis vinifera), 5'ss of exon 4
GAAACTGGCTGGTTACCTTTTCATATTGTTGCACGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAGgtttaacatcgt--taacaaaatatcatctcctgttttcctacttgcgatgtagtaggttctcgttttatcttgttcattgtctgagagacaacattgtgaacttgcag
||||| || ||| | ||    || ||  ||||   |||||||  ||   ||||  ||||||||||||||||||| |||||||||||||  |||    |        |  || || ||  ||   | ||  | | ||   | ||   ||| |  | | |   ||  ||  || |                   
GAAACAGGATGGATGCCGCGGCACATCATTGCTAAGGATGAGTGTGACAATATATTAGGTGTTGTTCCACTTTATCTTAAAAGgtttagaatctcagtttttctgcaatatttcttgagttttcatttaggctttatctgtttgctgttct--catatcttttaacttggatatgcag--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76922721|gb|DV169140.1|DV169140
EST:     CGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAG                         CCATTCTAGGGGAGAGTTTGTGTTTGATCAATCATGGGCAGAAGCTTACTA
genomic: CGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAGgtttaacatc ... gaacttgcagCCATTCTAGGGGAGAGTTTGTGTTTGATCAATCATGGGCAGAAGCTTACTA
EST: gi|89761707|gb|DY689615.1|DY689615
EST:     CGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAG                         CCATTCTAGGGGAGAGTTTGTGTTTGATCAATCATGGGCAGAAGCTTACTA
genomic: CGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAGgtttaacatc ... gaacttgcagCCATTCTAGGGGAGAGTTTGTGTTTGATCAATCATGGGCAGAAGCTTACTA
EST: gi|71766887|gb|DR964824.1|DR964824
EST:     CGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAG                         CCATTCTAGGGGAGAGTTTGTGTTTGATCAATCATGGGCAGAAGCTTACTA
genomic: CGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAGgtttaacatc ... gaacttgcagCCATTCTAGGGGAGAGTTTGTGTTTGATCAATCATGGGCAGAAGCTTACTA
EST: gi|78092697|gb|DV521071.1|DV521071
EST:     CGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAG                         CCATTCTAGGGGAGAGTTTGTGTTTGATCAATCATGGGCAGAAGCTTACTA
genomic: CGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAGgtttaacatc ... gaacttgcagCCATTCTAGGGGAGAGTTTGTGTTTGATCAATCATGGGCAGAAGCTTACTA
EST: gi|71318422|gb|DR795977.1|DR795977
EST:     CGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAG                         CCATTCTAGGGGAGAGTTTGTGTTTGATCAATCATGGGCAGAAGCTTACTA
genomic: CGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAGgtttaacatc ... gaacttgcagCCATTCTAGGGGAGAGTTTGTGTTTGATCAATCATGGGCAGAAGCTTACTA
EST: gi|91873363|gb|EB403320.1|EB403320
EST:     CGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTACAAG                         CCATTCTAGGGGAGAGTTTGTGTTTGATNCA-TCATGGGCA
genomic: CGGGATGAGAATGGACATATTATAGGTGTTGTTCCACTTTACCTTAAAAGgtttaacatc ... gaacttgcagCCATTCTAGGGGAGAGTTTGTGTTTGAT-CAATCATGGGCA