Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAGgtgaaatagcttggcatgtcttctgtccctattatctagtgttctcgatattttctttggattgtatctaaacaccaaatcatcagcgtgatatattctt...

Basic information

species Zea mays
transcript GRMZM2G157836_T05
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G157836_T07 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g32460.1 (Oryza sativa), 5'ss of exon 3
GTTGCTTGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAGgtg-aaatagcttggcatgtcttctgtccctattatctagtgttctc-gatattttctttggattgtatctaaacaccaaatcatcagcgtgatatattctt-----
|||||||||||||||| ||||| |||||||||||  | ||||| ||||| ||||||||  | |||  ||||| ||| || ||||| | | ||||  |||||||  ||| |||| ||  ||| |  ||     |  ||| ||  |  |||| | |  ||     
GTTGCTTGGGCATTGTTGATGGAGATGATGTTGAGCTTAATAACCTTCACCGACAGgtacagataatttggcgtgtattttgtccatgt-atcttctgttctctaatactttcatt--attttccctt----ctgaattatttgaatgatgtttgattactga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78087902|gb|DV516295.1|DV516295
EST:     TGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAG                         ATAATTCATAAAGAAGCATATGTTGGACAATCTAAAGTGAAGTCAGCAGCT
genomic: TGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAGgtgaaatagc ... actctctcagATAATTCATAAAGAAGCATATGTTGGACAATCTAAAGTGAAGTCAGCAGCT
EST: gi|71445496|gb|DR826546.1|DR826546
EST:     TGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAG                         ATAATTCATAAAGAAGCATATGTTGGACAATCTAAAGTGAAGTCAGCAGCT
genomic: TGGGCATTGTGGATGGTGATGATGTTGAATTGAATAATCTTCATCGACAGgtgaaatagc ... actctctcagATAATTCATAAAGAAGCATATGTTGGACAATCTAAAGTGAAGTCAGCAGCT