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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTTGTTAACATCAACCTCTGAAGTTTATGGTGATCCACTTGAGCATCCTCAAACTGAGGCCTACTGGGGCAATGTTAACCCGATTGgtaaatttgttcatctgaacattgaaaattatttgctttggtttttcataaattatctttcaagttctcttacagtttttatttaacttttttctattag

Basic information

species Zea mays
transcript GRMZM2G157772_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 5'ss of exon 7
GATTTTGTTAACATCAACCTCTGAAGTTTATGGTGATCCACTTGAGCATCCTCAAACTGAGGCCTACTGGGGCAATGTTAACCCGATTGgtaaatttgttcatctgaacattgaaaattatttgctttggtttttcataaattatctttcaagttctcttacagtttttatttaacttttttctattag
||||||||| || || |||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| ||||||||||| |||||||  | |||||      | ||  |  |  ||||    |   ||||| |||  ||  |   |||||| |||||    || | || | ||  ||| || ||
GATTTTGTTGACTTCGACCTCTGAAGTTTACGGTGATCCGCTTGAGCACCCTCAAACAGAGGCCTACTGGGGAAATGTTAACCCAATTGgtacgtctgttctatcacaaatacactac-atttatcctatattttcttaatctag-tgcaaagttcacttac----ttgaattgatttacttc-atcag

upper sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA11G15020.1 (Glycine max), 5'ss of exon 7
GATTTTGTTAACATCAACCTCTGAAGTTTATGGTGATCCACTTGAGCATCCTCAAACTGAGGCCTACTGGGGCAATGTTAACCCGATTGgtaaatttgttcatctgaacattgaaaattatttgctttggtttttcataaattatctttcaagttctcttacagtttttatttaacttttttctattag
||||||  | |||||||| ||||| || ||||| ||||| |||| |||||| ||| |||| | ||| ||||||||||| ||||| ||||||| ||   ||  |||     |       ||| |   ||   ||    || ||  |||   | | |     | | | | | |  |   |    |    ||
GATTTTACTCACATCAACATCTGAGGTATATGGGGATCCTCTTGTGCATCCCCAACCTGAAGGCTATTGGGGCAATGTGAACCCTATTGgtacatgcttttctctttgtctcagtctgtatctttcttaaattaaattatatcttctgctatgattgtgaaaaatatctgtgcagtataaaccatagag

upper sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 7
GATTTTGTTAACATCAACCTCTGAAGTTTATGGTGATCCACTTGAGCATCCTCAAACTGAGGCCTACTGGGGCAATGTTAACCCGATTGgtaaatttgttcatctgaacattgaaaattatttgctttggtttttcataaattatctttcaagttctcttacagtttttatttaacttttttc--tattag---
||||||  | |||||||| ||||| || ||||| ||||| |||| |||||| ||| ||||   ||| ||||||||||| ||||| ||||||| ||   ||  |||     |    |||   || ||| || || |  ||||| |  ||  |  |||| |||   || | |   |  | | | |  ||| |    
GATTTTACTCACATCAACATCTGAGGTATATGGGGATCCTCTTGTGCATCCCCAACCTGAAAGCTATTGGGGCAATGTGAACCCTATTGgtatatgcttttctctttgtctc---aatctgtttcttgggcttct--taaatgaaattatatcttctgttatgattgtgaaagatatctgtgcagtataaacca

upper sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 7
GATTTTGTTAACATCAACCTCTGAAGTTTATGGTGATCCACTTGAGCATCCTCAAACTGAGGCCTACTGGGGCAATGTTAACCCGATTGgtaaatttgttcatctgaacattgaaaattatttgctttggtttttcataaattatctttcaagttctcttacagtttttatttaacttt-----tttctattag
||| ||| | |||||||| || ||||| ||||| ||||| ||||||||||| |||||||||  ||| ||||| ||||||||||| || ||||  ||||    | | |   ||        |||| |||   |||  | |||  |      ||        | ||     |  ||   |      | |||||   
GATATTGCTTACATCAACTTCAGAAGTATATGGAGATCCTCTTGAGCATCCCCAAACTGAGAGCTATTGGGGAAATGTTAACCCAATAGgta--tttgcatctttcatggttttcttaggtttgttttttatttaaaaaaaaaaaaaggaaaagaaaagaaaagaaggaaaataggatgaaaaatctctat---

upper sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 4
lower sequence: PP1S189_118V6.1 (Physcomitrella patens), 5'ss of exon 7
GATTTTGTTAACATCAACCTCTGAAGTTTATGGTGATCCACTTGAGCATCCTCAAACTGAGGCCTACTGGGGCAATGTTAACCCGATTGgtaaatttg-ttcatctga---acattgaaaattatt-tgctttg-gtttttcataaattatctttca-agttctcttaca---gtttttatttaacttttttctattag---------
|||| |  | || || ||||||||||||||||| |||||  | ||||||||||| || ||||  |||||||| || || ||||| ||||||||||     |||  | |    | | |   |  ||   ||| || |   ||  | || | |  | || | |  |  ||||     | |||  | |   ||   | ||           
GATTCTTCTCACGTCTACCTCTGAAGTTTATGGAGATCCTTTGGAGCATCCTCAGACAGAGGAATACTGGGGAAACGTAAACCCAATTGgtaaatccaactcacgttacacgcttggtgcaccatcacgctctgtgcagtttctgaactctgatacacaatcattctacacaaaatattaccttaacgttgcttcttgtcttgtgtag

upper sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 4
lower sequence: EFJ17446 (Selaginella moellendorffii), 5'ss of exon 6
GATTTTGTTAACATCAACCTCTGAAGTTTATGGTGATCCACTTGAGCATCCTCAAACTGAGGCCTACTGGGGCAATGTTAACCCGATTGgtaaatttgttcatctgaacattgaaaattatttgctttggtttttcataaattatctttcaagttctcttacagtttttatttaacttttttctattag
|||| |  | || |||||||| ||||||||||| |||||||| |||||||| ||||  ||||  |||||||||||||| || || || ||||     || || | ||   |||    || | | |  ||  |  ||||    |  |   ||                                      
GATTCTACTCACGTCAACCTCCGAAGTTTATGGGGATCCACTGGAGCATCCACAAAAGGAGGAATACTGGGGCAATGTGAATCCCATAGgta----cgtgcaccagatatttgtc--ttgtctac--tgcctgctcattg--tgccgagcag-------------------------------------

upper sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 4
lower sequence: EFJ35029 (Selaginella moellendorffii), 5'ss of exon 6
GATTTTGTTAACATCAACCTCTGAAGTTTATGGTGATCCACTTGAGCATCCTCAAACTGAGGCCTACTGGGGCAATGTTAACCCGATTGgtaaatttgttcatctgaacattgaaaattatttgctttggtttttcataaattatctttcaagttctcttacagtttttatttaacttttttctattag
||||||  | || |||||||| ||||||||||| |||||||| |||||||| ||||  ||||  |||||||||||||| || || || ||||     || || | ||   |||    || | | |  ||  |  ||||    | ||   ||                                      
GATTTTACTCACGTCAACCTCCGAAGTTTATGGGGATCCACTGGAGCATCCACAAAAGGAGGAATACTGGGGCAATGTGAATCCCATAGgta----cgtgcaccagatatttgtc--ttgtctac--tgcctgctcattg--tgtcaagcag-------------------------------------