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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaatggagcaaacttctaaataatgccatttgggctcactcaagtaatcatatatcttttaatgcacttaatagcaatgtgatctgcttacttc...

Basic information

species Zea mays
transcript GRMZM2G157316_T03
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148962075|gb|EE012879.2|EE012879
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|76281436|gb|DV021004.1|DV021004
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|71305646|gb|DR788962.1|DR788962
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|71448463|gb|DR829513.1|DR829513
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|93014294|gb|EB639814.1|EB639814
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|149102614|gb|EE188245.2|EE188245
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|71305918|gb|DR789090.1|DR789090
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGCCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|93013209|gb|EB638729.1|EB638729
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|148999432|gb|EE036384.2|EE036384
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|74237515|gb|DT645429.1|DT645429
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|50336165|gb|CO531291.1|CO531291
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|93013635|gb|EB639155.1|EB639155
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|149080963|gb|EE170059.2|EE170059
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|149105307|gb|EE290799.2|EE290799
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAAGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|86470247|gb|DY236617.1|DY236617
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|71327756|gb|DR800512.1|DR800512
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG
EST: gi|89762002|gb|DY689797.1|DY689797
EST:     TATCACAGCATCATCGCTCCTCGAGATCCTGTCCTTGGTTATCTTGAAAG                         ATACAAATTACATCAGCACGCTTGCATCACGGCCTTATGGGCTCATATTTG
genomic: TATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaat ... tttcttgcagATACAAATTACATCAGCACGCTTGCATCAGGGCCTTATGGTCTCATATTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTTTTGTCTCTTCACTATCACAGCATCATCGCTCCTCGAGATCCTGTCATTGGTTATCTTGAAAGgtaaattaatggagcaaacttctaaataatgccatttgggctcactcaagtaatcatatatcttttaatgcacttaatagcaatgtgatctgcttacttc

- - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - -  GAGATC