1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTATAGTGAGAAAGATGCTGCAGTGGTAGTCCGCCAAATGCTCAAAGTAGCTGCTGAATGCCATCTGCGTGGGTTAGTTCACCGAGATATGAAGCCTGAGgtagaaatcaaatacttcaatctctttgcacacagtaagcatttggtgatatttcactacttcctcaggtcatgtaagactgtacctattttccttcccag
species | Zea mays |
transcript | GRMZM2G157068_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGCTGAATGCCATCTGCGTGGTTTAGTTCACCGAGATATGAAGCCTGAG AACTTCCTTTTCAAATCGAACAAGGAGGATTCACCACTAAAGGCGACAGATEST: gi|149082402|gb|EE171589.2|EE171589
genomic: CTGCTGAATGCCATCTGCGTGGGTTAGTTCACCGAGATATGAAGCCTGAGgtagaaatca ... tccttcccagAACTTCCTTTTCAAATCGAACAAGGAGGATTCACCACTAAAGGCGACAGAT
EST: CTGCTGAATGCCATCTGCGTGGGTTAGTTCACCGAGATATGAAGCCTGAG AACTTCCTTTTCAAATCGAACAAAGAGGATTCACCACTAAAGEST: gi|211195528|gb|FL100652.1|FL100652
genomic: CTGCTGAATGCCATCTGCGTGGGTTAGTTCACCGAGATATGAAGCCTGAGgtagaaatca ... tccttcccagAACTTCCTTTTCAAATCGAACAAGGAGGATTCACCACTAAAG
EST: CTGCTGAATGCCATCTGCGTGGGGTAGTTCACCGAGATATGAAGCCTGAG AACTTCCTTTTTCAA-TCGAACA-GGAGGATTCACCACTAA
genomic: CTGCTGAATGCCATCTGCGTGGGTTAGTTCACCGAGATATGAAGCCTGAGgtagaaatca ... tccttcccagAACTTCCTTTT-CAAATCGAACAAGGAGGATTCACCACTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATAGTGAGAAAGATGCTGCAGTGGTAGTCCGCCAAATGCTCAAAGTAGCTGCTGAATGCCATCTGCGTGGGTTAGTTCACCGAGATATGAAGCCTGAGgtagaaatcaaatacttcaatctctttgcacacagtaagcatttggtgatatttcactacttcctcaggtcatgtaagactgtacctattttccttcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC