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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTAAGTTTCTTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTATGGCAGTGAAACTgtaagttctcctttgtcacttaagtagccttagtacttactttccagtgctttgtaatggttgtttattcaaatcttgcag

Basic information

species Zea mays
transcript GRMZM2G156800_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G156800_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g55560.2 (Oryza sativa), 5'ss of exon 4
GAAATTAAGTTTCTTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTATGGCAGTGAAACTgtaagttctcctttgtc--acttaagtagccttagtacttactttccagtgctttgtaatggttgtttattcaaatcttgcag
||||| || |||||||||||||| ||||||||||| || ||||||||||| |||||||||  ||||||||||| | || |  | | | ||    |||     || ||   | ||  |   |||| |  | |    | |  ||||||
GAAATAAAATTTCTTAGTCAATTCAAGCATGAAAACATAGTGCAGTACTACGGCAGTGAATATgtaagttctcatgtgccaaattgaggtgatattatgcgctagttattaatgtatc-caatgatcatctgg--atactttgcag

upper sequence: GRMZM2G156800_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv18s0001g11240.t01 (Vitis vinifera), 5'ss of exon 3
GAAATTAAGTTTCTTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTATGGCAGTGAAACTgtaagttctcctttgtcacttaagtagccttagtacttactttccagtgctttgtaatggttgtttattcaaatcttgcag--
||||||||  ||||   ||| || ||||||  ||||||||||||||||||||||||||||| ||||| |  |   |||   | ||     |  || |  | |  ||  | |  ||    ||  ||    |      |  |||    
GAAATTAAAGTTCTCCATCATTTAAAGCATCCAAATATTGTGCAGTACTATGGCAGTGAAATTgtaaatatttgcttggtccctattagtctgtaatggtcaaatttgacttattaaagatctttcacaaactggtttatgcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87156020|gb|DY400809.1|DY400809
EST:     TTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTATGGCAGTGAAACT                         ATCGAAGATAGATTCTACATATACCTGGAGTATGTTCATCCTGGTTCAATC
genomic: TTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTATGGCAGTGAAACTgtaagttctc ... aatcttgcagATCGAAGATAGATTCTACATATACCTGGAGTATGTTCATCCTGGTTCAATC
EST: gi|22542085|gb|BU092523.1|BU092523
EST:     TTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTATGGCAGTGAAACT                         ATCGAAGATAGATTCTACATATACCTGGAGTATGTTCATCCTGGTTCAATC
genomic: TTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTATGGCAGTGAAACTgtaagttctc ... aatcttgcagATCGAAGATAGATTCTACATATACCTGGAGTATGTTCATCCTGGTTCAATC
EST: gi|22473422|gb|BU037902.1|BU037902
EST:     TTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTATGGCAGTGAAACT                         ATCGAAGATAGATTCTACATATACCTGGAGTATGTTCATCCTGGTTCAATC
genomic: TTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTATGGCAGTGAAACTgtaagttctc ... aatcttgcagATCGAAGATAGATTCTACATATACCTGGAGTATGTTCATCCTGGTTCAATC
EST: gi|50338068|gb|CO533194.1|CO533194
EST:     TTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTATGGCAGTGAAACT                         ATCGAAGATAGATTCTACATATACCTGGAGTATGTTCATCCTGGTTCAATC
genomic: TTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTATGGCAGTGAAACTgtaagttctc ... aatcttgcagATCGAAGATAGATTCTACATATACCTGGAGTATGTTCATCCTGGTTCAATC
EST: gi|87157200|gb|DY401989.1|DY401989
EST:     TTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTATGGCAGTGAAACT                         ATCGAAGATAGATTCTACATATACCTGGAGTATGTTCATCCTGGTTCAATC
genomic: TTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTATGGCAGTGAAACTgtaagttctc ... aatcttgcagATCGAAGATAGATTCTACATATACCTGGAGTATGTTCATCCTGGTTCAATC
EST: gi|26558715|gb|CA830950.1|CA830950
EST:     TTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTATGGCAGTGAAACT                         ATCGAAGATAGATTCTACATATACCTGGAGTATGTTCATCCTGGTTCAATC
genomic: TTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTATGGCAGTGAAACTgtaagttctc ... aatcttgcagATCGAAGATAGATTCTACATATACCTGGAGTATGTTCATCCTGGTTCAATC
EST: gi|6031429|gb|AW076331.1|AW076331
EST:     TTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTATGGCAGTGAAACT                         ATCGAAGATAGATTCTACATATACCTGGAGTATGTTCATCCTGGTTCAATC
genomic: TTAGTCAATTTAAGCATGAAAATATTGTGCAGTACTATGGCAGTGAAACTgtaagttctc ... aatcttgcagATCGAAGATAGATTCTACATATACCTGGAGTATGTTCATCCTGGTTCAATC