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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTTAGCACAAAATTACTTAACCGGGCCTTTGCCATCTTTCCTCGGGAATTTGACTGCTATGCAGTACATgtgagatttacaacataaaatattaccctgttacatgttttttacttaacatcaaatcttaaacttttctctttcaaattacaag

Basic information

species Zea mays
transcript GRMZM2G155837_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155837_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g52600.1 (Oryza sativa), 5'ss of exon 4
GAATTTAGCACAAAATTACTTAACCGGGCCTTTGCCATCTTTCCTCGGGAATTTGACTGCTATGCAGTACATgtgagatttacaacata-aaatattaccctgttacatgttttttacttaacatcaaatcttaaacttttctctttcaaat-tacaag
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GAATTTAGGGCAAAATACATTAACAGGGCCTTTGCCATCATTCATTGGGGAGTTGACTAATATGCAGAACATgtgagatttagaactcacaaacatcattttagtaaatgtttt--gctttgcattgaatctcac-cttttctctcttgaacacacaag

upper sequence: GRMZM2G155837_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g52614.1 (Oryza sativa), 5'ss of exon 4
GAATTTAGCACAAAATTACTTAACCGGGCCTTTGCCATCTTTCCTCGGGAATTTGACTGCTATGCAGTACATgtgagatttacaacata-aaatattaccctgttacatgttttttacttaacatcaaatcttaaacttttctctttcaaat-tacaag
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GAATTTAGGACAAAATTTATTATCAGGGCCTTTGCCATCGTTCATTGGGGAGCTGACTAATATGCAGAAAATgtgagatttacaactcataaacatcatttcactaaatgttttt--ctttggattgactcacac-cttttctcttttgaacatacaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18384226|gb|BM417425.1|BM417425
EST:     ACCGGGCCTTTGCCATCTTTCCTTGGGAATTTGACTGCTATGCAGTACAT                         GAGTTTGGGCATCAATGCATTGTCTGGATCTGTTCCAAAGGAGCTTGGGAA
genomic: ACCGGGCCTTTGCCATCTTTCCTCGGGAATTTGACTGCTATGCAGTACATgtgagattta ... aaattacaagGAGTTTGGGCATCAATGCATTGTCTGGATCTGTTCCAAAGGAGCTTGGGAA