1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAACACAGATGACTCAGCAGGTGTAGGTGGCGGTGCTGTTACATCACTAATTACAATGCTTCTTACTGGAGGGAGCCTATCTGCTGGTGGTCTGAGACAGgtaaattcttgagcttgatatggaaatcgtcggtttattcaagttatcgtcagcgtttcatatcggtagctgtttgcgttgttcgtgcag
species | Zea mays |
transcript | GRMZM2G155422_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTACAATGCTTCTTACTGGAGGGAGCCTATCTGCTGGTGGTTTGAGACAG GAGCCACAACTGACGGCATGCGAGCCATTTGATGTCTATGCGAAGCCCTTCEST: gi|149106202|gb|EE291893.2|EE291893
genomic: TTACAATGCTTCTTACTGGAGGGAGCCTATCTGCTGGTGGTCTGAGACAGgtaaattctt ... gttcgtgcagGAGCCACAACTGACGGCATGCGAGCCATTTGATGTCTATGCGAAGCCCTTC
EST: TTACAATGCTTCTTACTGGAGGGAGCCTATCTGCTGGTGGTCTGAGACAG GAGCCACAACTGACGGCATGCGAGCCATTTGATGTCTATGCGAAGCCCTTCEST: gi|149058837|gb|EE156858.2|EE156858
genomic: TTACAATGCTTCTTACTGGAGGGAGCCTATCTGCTGGTGGTCTGAGACAGgtaaattctt ... gttcgtgcagGAGCCACAACTGACGGCATGCGAGCCATTTGATGTCTATGCGAAGCCCTTC
EST: TTACAATGCTTCTTACTGGAGGGAGCCTATCTGCTGGTGGTTTGAGACAG GAGCCACAACTGACGGCATGCGAGCCATTTGATGTTTATGCGAAGCCCTTCEST: gi|113701364|gb|EE678868.1|EE678868
genomic: TTACAATGCTTCTTACTGGAGGGAGCCTATCTGCTGGTGGTCTGAGACAGgtaaattctt ... gttcgtgcagGAGCCACAACTGACGGCATGCGAGCCATTTGATGTCTATGCGAAGCCCTTC
EST: CTGGAGGGAGCCTATCTGCTGGTGGTCTGAGACAG GAGCCACAACTGACGGCATGCGAGCCATTTGATGTCTATGCGAAGCCCTTCEST: gi|71773666|gb|DR971563.1|DR971563
genomic: CTGGAGGGAGCCTATCTGCTGGTGGTCTGAGACAGgtaaattctt ... gttcgtgcagGAGCCACAACTGACGGCATGCGAGCCATTTGATGTCTATGCGAAGCCCTTC
EST: TTACAATGCTTCTTACTGGAGGGAGCCTATCTGTTGGTGGTTTGAGACAG GAGCCACAACTGACGGCATGCGAGCCATTTGATGTTTATGCGAAGCCCTTCEST: gi|67017643|gb|CO446392.1|CO446392
genomic: TTACAATGCTTCTTACTGGAGGGAGCCTATCTGCTGGTGGTCTGAGACAGgtaaattctt ... gttcgtgcagGAGCCACAACTGACGGCATGCGAGCCATTTGATGTCTATGCGAAGCCCTTC
EST: TTACAATGCTTCTTACTGGAGGGAGCCTATCTGCTGGTGGTCTGAGACAG GAGCCACAACTGACGGCATGCGAGCCATTTGATGTCTATGCGAAGCCCTTC
genomic: TTACAATGCTTCTTACTGGAGGGAGCCTATCTGCTGGTGGTCTGAGACAGgtaaattctt ... gttcgtgcagGAGCCACAACTGACGGCATGCGAGCCATTTGATGTCTATGCGAAGCCCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACACAGATGACTCAGCAGGTGTAGGTGGCGGTGCTGTTACATCACTAATTACAATGCTTCTTACTGGAGGGAGCCTATCTGCTGGTGGTCTGAGACAGgtaaattcttgagcttgatatggaaatcgtcggtttattcaagttatcgtcagcgtttcatatcggtagctgtttgcgttgttcgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG