Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCCAGGACACCCTGCATTAGATGAGGATGGGAGGAATGCTTTGAGGCGGTTGTTAACCGCATATGCAAGGCATAATCCATCAGTTGGGTACTGCCAGgtaaattgatgccaattgaaggaattttgttttttttatctagcctcttgttggcttaattgtattgaatgagatagattgtaatcctaattggtgcatg...

Basic information

species Zea mays
transcript GRMZM2G154883_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G154883_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g17540.1 (Oryza sativa), 5'ss of exon 6
ATTTCCAGGACACCCTGCATTAGATGAGGATGGGAGGAATGCTTTGAGGCGGTTGTTAACCGCATATGCAAGGCATAATCCATCAGTTGGGTACTGCCAGgtaaattgatgccaattgaaggaattttgttttttttatctagcctcttgttggcttaattgtattgaatgagatagattgtaatcctaattggtgcatg--
|||||| |||||||||||| |||||||||| ||||| ||||||||| | ||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| ||   ||||  |||| |  |||||| | ||  || | || ||||||||   ||      |          ||| |  | | |   | ||  ||| ||  
ATTTCCGGGACACCCTGCACTAGATGAGGACGGGAGAAATGCTTTGCGACGGTTATTAACAGCATATGCAAGGCATAACCCATCAGTTGGATACTGCCAGgtgaacaaatgctcattggat-aattttatgttagtt-tttaacctcttgtaatctactccctccgtcccataatataagggattttgagtttttgcttgca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211448474|gb|FL194336.1|FL194336
EST:     TGTTAACCGCATATGCAAGGCATAATCCATCAGTTGGGTACTGCCAG                         GCCATGAACTTTTTTGCTGGGCTATTTTTGTTATTCATGCCTGAAGAAAAT
genomic: TGTTAACCGCATATGCAAGGCATAATCCATCAGTTGGGTACTGCCAGgtaaattgat ... cctcttgcagGCCATGAACTTTTTTGCTGGGCTATTTTTGTTATTCATGCCTGAAGAAAAT