1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTCATGTCAAAAAAGGGTAGATGCCACTCGTTGTATAAAACTTCGATCACTTCCTCCAGTTGTCAATTTTCAACTGAAGCGTTATGTATTCCTCCCGAAGgtaatataccttgattgtaaaatgttcctttcacatttctttagtcctgtgcattcttctccttttttgtgaagttttttctatcttttctcattgccag
species | Zea mays |
transcript | GRMZM2G154621_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTCCTCCAGTTGTCAATTTTCAACTGAAGCGTTATGTATTCCTCCCGAAG ACAACAACAAAGNNNNNNNTTTCTTCAACATTCAGTTTCCCAGGACAACTTEST: gi|71757284|gb|DR955221.1|DR955221
genomic: TTCCTCCAGTTGTCAATTTTCAACTGAAGCGTTATGTATTCCTCCCGAAGgtaatatacc ... tcattgccagACAACAACAAAGAAAAAAATTTCTTCAACATTCAGTTTCCCAGGACAACTT
EST: TTCCTCCAGTTGTCAATTTTCAACTGAAGCGTTATGTATTCCTCCCGAAG ACAACAACAAAGNNNNNNNTTTCTTCAACATTCAGTTTCCCAGGACAACTTEST: gi|31358736|gb|CD443093.1|CD443093
genomic: TTCCTCCAGTTGTCAATTTTCAACTGAAGCGTTATGTATTCCTCCCGAAGgtaatatacc ... tcattgccagACAACAACAAAGAAAAAAATTTCTTCAACATTCAGTTTCCCAGGACAACTT
EST: TTCCTCCAGTTGTCAATTTTCAACTGAAGCGTTATGTATTCCTCCCGAAG ACAACAACAAAGNNNNNNNTTTCTTCAACATTCAGTTTCCCAGGACAACTT
genomic: TTCCTCCAGTTGTCAATTTTCAACTGAAGCGTTATGTATTCCTCCCGAAGgtaatatacc ... tcattgccagACAACAACAAAGAAAAAAATTTCTTCAACATTCAGTTTCCCAGGACAACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCATGTCAAAAAAGGGTAGATGCCACTCGTTGTATAAAACTTCGATCACTTCCTCCAGTTGTCAATTTTCAACTGAAGCGTTATGTATTCCTCCCGAAGgtaatataccttgattgtaaaatgttcctttcacatttctttagtcctgtgcattcttctccttttttgtgaagttttttctatcttttctcattgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC