1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTCAAAGAGAGAGGCAGAGGATAAGATAGTTCCACGAGAAATCGATGCAGATGACTCCGATGTGGAGCCTAAAAGTGATGATGAGAGgtctgtaccattgtccttttcagcgttttatcgaaatgctcctgtgattattcttttgttagcaggatgaaattgacttgcaaccgcattatccattttc...
species | Zea mays |
transcript | GRMZM2G154278_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAAATCGATGCAGATGACTCCGATGTGGAGCCTAAAAGTGATGATGAGAG CGATGAAGATGGCGACGACGACGACCCCGAAGCTTTAATGGCAGAGCTTGAEST: gi|31558163|gb|CD527375.1|CD527375
genomic: GAAATCGATGCAGATGACTCCGATGTGGAGCCTAAAAGTGATGATGAGAGgtctgtacca ... ttgtgttcagCGATGAAGATGGCGACGACGACGACACCGAAGCTCTAATGGCAGAGCTTGA
EST: GAAATCGATGCAGATGACTCCGATGTGGAGCCTAAAAGTGATGATGAGAG CGATGAAGATGGCGACGACGACGACACCGAAGCTCTAATGGCAGAGCTTGAEST: gi|211076270|gb|FL148939.1|FL148939
genomic: GAAATCGATGCAGATGACTCCGATGTGGAGCCTAAAAGTGATGATGAGAGgtctgtacca ... ttgtgttcagCGATGAAGATGGCGACGACGACGACACCGAAGCTCTAATGGCAGAGCTTGA
EST: GAAATCGATGCAGATGACTCCGATGTGGAGCCTAAAAGTGATGATGAGAG CGATGAAGATGGCGACGACGACGACACCGAAGCTCTAATGGCAGAGCTTGA
genomic: GAAATCGATGCAGATGACTCCGATGTGGAGCCTAAAAGTGATGATGAGAGgtctgtacca ... ttgtgttcagCGATGAAGATGGCGACGACGACGACACCGAAGCTCTAATGGCAGAGCTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCAAAGAGAGAGGCAGAGGATAAGATAGTTCCACGAGAAATCGATGCAGATGACTCCGATGTGGAGCCTAAAAGTGATGATGAGAGgtctgtaccattgtccttttcagcgttttatcgaaatgctcctgtgattattcttttgttagcaggatgaaattgacttgcaaccgcattatccattttc
- - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG