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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTAATAGAGCGTTGTCTTCAGCTATACATGAACAAAGGAGAAGTTGTTAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAGgtgacgtgttcatgctccaatggtgacgatgttcatgttttttttttattcactagtttccccacaatgagcttttggtgggacattttgtcaccctttg...

Basic information

species Zea mays
transcript GRMZM2G154221_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G154221_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g12080.3 (Oryza sativa), 5'ss of exon 4
AATTTAATAGAGCGTTGTCTTCAGCTATACATGAACAAAGGAGAAGTTGTTAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAGgtgacgtgttcatgctccaatggtgacgatgttcatgtttttttt-ttattcactagtttccccacaatgagcttttggtgggacattttgtcaccctttg
||||| |||||||| ||||| ||||||||||||||||||||||| |||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||| || | ||   ||   || ||| ||| || |||||||     ||    ||     || | |   |    |  |  | |    ||     ||   |||
AATTTGATAGAGCGCTGTCTACAGCTATACATGAACAAAGGAGAGGTTGTTAGGACGCTTTCTACTCGTGCAAGAATAGAACCTGGTTTCACTACTTTAGgtgatgt-tgcaaaatcagttgatgatgatattaatgttttgagggtttcataccgcactcactagttttgtgtaatctttgttttttcccgtacttattg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101393686|gb|EB818775.1|EB818775
EST:     TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAG                         TATGGCAGAAACTCGAAGAAGAGAACTCCGAGTTCTCTAGGGCTTACTATA
genomic: TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAGgtgacgtgtt ... ttatgttcagTATGGCAGAAACTCGAAGAAGAGAACTCCGAGTTCTTTAGGGCTTACTATA
EST: gi|33467119|gb|CF244168.1|CF244168
EST:     TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAG                         TATGGCAGAAACTCGAAGAAGAGAACTCCGAGTTCTTTAGGGCTTACTATA
genomic: TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAGgtgacgtgtt ... ttatgttcagTATGGCAGAAACTCGAAGAAGAGAACTCCGAGTTCTTTAGGGCTTACTATA
EST: gi|50327503|gb|CO522629.1|CO522629
EST:     TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAG                         TATGGCAGAAACTCGAAGAAGAGAACTCCGAGTTCTTTAGGGCTTACTATA
genomic: TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAGgtgacgtgtt ... ttatgttcagTATGGCAGAAACTCGAAGAAGAGAACTCCGAGTTCTTTAGGGCTTACTATA
EST: gi|78118653|gb|DV537037.1|DV537037
EST:     TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAG                         TATGGCAGAAACTCGAAGAAGAGAACTCCGAGTTCTTTAGGGCTTACTATA
genomic: TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAGgtgacgtgtt ... ttatgttcagTATGGCAGAAACTCGAAGAAGAGAACTCCGAGTTCTTTAGGGCTTACTATA
EST: gi|78084282|gb|DV512675.1|DV512675
EST:     TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAG                         TATGGCAGAAACTCGAAGAAGAGAACTCCGAGTTCTTTAGGGCTTACTATA
genomic: TAGAACTCTTTCTACTCGTGCTAGAATAGAACCTGGCTTCACTACTTTAGgtgacgtgtt ... ttatgttcagTATGGCAGAAACTCGAAGAAGAGAACTCCGAGTTCTTTAGGGCTTACTATA