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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGGAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtgatacgttgacatgacagttgctttgttcaaaacctaatgctgttgtgatatgtacttctgcctgtgttgatgaacatccccaacaaatgaatttcctgtactctgcag

Basic information

species Zea mays
transcript GRMZM2G153704_T07
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153704_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os01g04190.2 (Oryza sativa), 5'ss of exon 6
TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGGAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtgatacgttgacatgacagttgctttgttcaaaacctaatgctgttgtgatatgtacttctgcctgtgttgatgaacatccccaacaaatgaatttcctgtact-----ctgcag
|||||||||||| ||| | ||||||||||||||||||||||| |||||||| |||||||| ||  | || ||||||||||| |||||||||||||||||||||||||||   ||| |    | |    ||||| |||   | ||  ||||     |  |||| ||| ||  |||  ||||||| |||||||| |||  |   |   ||     ||||||
TGCAACAGCTCATGATGTTCGCACAATGATTATTGGCCGATTACTTGCTGGGATTGGTATTGGCATATCTTCTGCTCTTGTGCCCCTTTACATATCTGAGgttgtgata-actgataa---attcaaattgttgaaa---tgat--tgtt----cagctactactggctaggttcttgaacatgcccaacaactgagctatttacgcttgcgcctgcag

upper sequence: GRMZM2G153704_T01 (Zea mays), 5'ss of exon 10
lower sequence: AT5G16150.3 (Arabidopsis thaliana), 5'ss of exon 5
TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGGAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtg-atacgttgacatg-acagttgctttgttcaaaacctaatgctgttgtgatatgtacttctgcctgtgttgatgaacatccccaacaaatgaatttcctgtactctgcag
||||||||||||   | | |  || |||||| | || ||  |||| ||||||||||| || ||  ||||||| ||  ||||||| ||||||||||||||||||||  | |   |||  |  |   ||  |    |   | | ||| | ||||  ||| |||   | ||  | |||   ||||        |  | ||  | ||             
TGCAACAGCTCAGAGTGTGCAGACTATGATTGTGGGACGTCTGCTCGCTGGAATTGGAATTGGAATCTCATCAGCGATTGTACCACTTTACATATCTGAGgttgtttaaatactgattttcattatttttgcacttttagcataa-gatgtta-gatttgtttatatgt-tatgtctctgaa-gcgtttgatga-tggttgtcag-----------

upper sequence: GRMZM2G153704_T01 (Zea mays), 5'ss of exon 10
lower sequence: Vv14s0006g02720.t01 (Vitis vinifera), 5'ss of exon 6
TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGGAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtgatacgttgacatgacagttgctttgtt-caaaacctaatgct-gttgtgatatgtacttctgcctgtgttgatgaacatccccaacaaatgaatttcctgtactctgcag
||| ||||| ||   | | |  || ||||| |||||  | || |||||||| ||||| || ||  |||||||||| ||||| || ||||||||||||||||| || ||   |  |  |  || |    || ||     |  |  || | ||| | ||   | | | ||       |||   ||||    ||                         
TGCGACAGCACAGAGTGTGCAGACTATGATAATTGGTAGGTTACTTGCTGGCATTGGAATTGGCATCTCATCTGCACTTGTGCCACTTTACATATCTGAGgtagtaatgtttcaatttttcattattattattatgctattttttgttcgtttttatgaatgcctttg---aaactgaaacacattttaaatggtcag------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211050167|gb|FL124868.1|FL124868
EST:     GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG                         ATCTCACCAACTGAAATTCGT-GAACACTTGGTACCGTTAATCAACTTTTT
genomic: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
EST: gi|32847646|gb|CD987327.1|CD987327
EST:     ACCCCTTTACATATCTGAG                         ATATCACCAACTGAAATTCGTGGAACACTTGGTTCCGTTAATCAACTTTTT
genomic: ACCCCTTTACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
EST: gi|211138131|gb|FL231032.1|FL231032
EST:     GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG                         ATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
genomic: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
EST: gi|211138132|gb|FL231033.1|FL231033
EST:     GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG                         ATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT
genomic: GAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAGgttgtgatac ... tactctgcagATCTCACCAACTGAAATTCGTGGAACACTTGGTACCGTTAATCAACTTTTT