1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatacttttacatgctcaacttaatactttttcttggtgtttgtaaaggaacatctgacatttggattgattgtgccacgtaatgtttttttttttgcc...
species | Zea mays |
transcript | GRMZM2G153704_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGG---G --TGGGTGGNTAGCACATCCTTGGCTGGTGCAACACTAGGNTCTTTTACTGEST: gi|31355374|gb|CD439731.1|CD439731
genomic: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatactttt ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGG---G --TGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|149082633|gb|EE171834.2|EE171834
genomic: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatactttt ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGG---G --TGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|149083192|gb|EE172463.2|EE172463
genomic: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatactttt ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGG---G --TGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|31355588|gb|CD439945.1|CD439945
genomic: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatactttt ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGG---G --TGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|148996907|gb|EE035711.2|EE035711
genomic: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatactttt ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGG---G --TGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|211063244|gb|FL401231.1|FL401231
genomic: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatactttt ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: ATCTCGCCAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGG---G --TGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|211266596|gb|FL404017.1|FL404017
genomic: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatactttt ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: ATCTCGCGAAGGATCTTGTGATTGCTGAAAATGCTGTCTTGCAGGG---G --TGGGTGGCTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|31354767|gb|CD439124.1|CD439124
genomic: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatactttt ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGG---G --TGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|78078828|gb|DV507240.1|DV507240
genomic: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatactttt ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGG---G --TGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|148981335|gb|EE027589.2|EE027589
genomic: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatactttt ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGG---G --TGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|148977355|gb|EE026050.2|EE026050
genomic: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatactttt ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGG---G --TGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|211349168|gb|FL426325.1|FL426325
genomic: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatactttt ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGG---G G-TGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|148971787|gb|EE022525.2|EE022525
genomic: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatactttt ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGG---G --TGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|148953947|gb|EC899333.2|EC899333
genomic: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatactttt ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGG---G --TGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|31355150|gb|CD439507.1|CD439507
genomic: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatactttt ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGG---G --TGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|78075828|gb|DV504262.1|DV504262
genomic: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatactttt ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGG---G --TGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|211465272|gb|FL339432.1|FL339432
genomic: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatactttt ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGG---G --TGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|211210064|gb|FL412311.1|FL412311
genomic: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatactttt ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGG---G --TGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGEST: gi|149055222|gb|EE156147.2|EE156147
genomic: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatactttt ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGG
EST: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGG---G --TGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTGEST: gi|211157837|gb|FL370475.1|FL370475
genomic: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatactttt ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGGTGCAACACTAGGTTCTTTTACTG
EST: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGG---G G-TGGGTGGTTAGCACATCCTTGGCTGG
genomic: ATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatactttt ... tgttactcagGGTGGGTGGTTAGCACATCCTTGGCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGGTCAATGGCGCACTTGAATATCTCGCGAAGGATCTTGGGATTGCTGAAAATGCTGTCTTGCAGGGTATGgcatacttttacatgctcaacttaatactttttcttggtgtttgtaaaggaacatctgacatttggattgattgtgccacgtaatgtttttttttttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggaaca