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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGATGCTGGCGCTGCACGGACAGGGCCGGAAGCTCATGTGCGGCCTCGCCGCCACCGTCTGCTCCATCTGCATGTACGCCTCGCCGCTCTCCATCATGgtatacgtttcgttccacggcatatcggataattatatcgtcaggcactgtacgtacggcagcttgactgtttcgttcgttcgtgcgtgcag

Basic information

species Zea mays
transcript GRMZM2G153358_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153358_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g35140.1 (Oryza sativa), 5'ss of exon 4
GTCGATGCTGGCGCTGCACGGACAGGGCCGGAAGCTCATGTGCGGCCTCGCCGCCACCGTCTGCTCCATCTGCATGTACGCCTCGCCGCTCTCCATCATGgtatacgttt--cgttccacggcatatcggataattatatcgtcaggcactgtacgtacggcagcttgactgtttcgttcgttcgtgcgtgcag------
 ||  | || || || ||||| |||  ||| |||||| | |||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||   |  |  | |||   |    || |  ||  | | |    | | |   ||  |          |||    ||   |   |  || |          
CTCCCTCCTCGCCCTCCACGGCCAGCACCGCAAGCTCCTCTGCGGCGTCGCCGCCACCGTCTGCTCCATCTGCATGTACGCCTCCCCCCTCTCCATCATGgtacgtgcctgccattctcggtttcatggattagatttttttcaaagaaaaatagttttaattatacgacgcaatcagccaaaccggcttatgttaaggg