1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TACCTTGGCTTTGCTGCAGCAGATGAGTATTGCACACCACGTGTTATTGAGTCTCTCAAGAAATACTCAGCAAGTACCTGCAGTGTTCGTGTCGATGGCGgtaggatacattctcaacatgcttatatgtttacaaatttttaagaacaaaaactactaaactgatccctttcatatcgtatcag
species | Zea mays |
transcript | GRMZM2G152888_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTCTCTCAAGAAATACTCAGCAAGTACCTGCAGTGGTCGTGTCGATGGCN GTACGAC-AAGCTTCACAATGAGCTGTGAG-AGTTGGCTGCGCGTTTTTGTEST: gi|211527655|gb|FL070682.1|FL070682
genomic: GTCTCTCAAGAAATACTCAGCAAGTACCTGCAGTGTTCGTGTCGATGGCGgtaggataca ... atcgtatcagGTACGACCAAGCTTCACAATGAGCTG-GAGGAGTTGGCTGCGCGTTTT-GT
EST: GTCTCTCAAGAA-TACTCAGCAAGTACCTGCAGTGTTCGTGTCGATGGCG GTACGACAAAGCTTCA-AATGAEST: gi|76014233|gb|DT941403.1|DT941403
genomic: GTCTCTCAAGAAATACTCAGCAAGTACCTGCAGTGTTCGTGTCGATGGCGgtaggataca ... atcgtatcagGTACGACCAAGCTTCACAATGA
EST: GTCTCTCAAGAAATACTCAGCAAGTACCTGCAGTGTTCGTGTCGATGGCG GTACGACCAAGCTTCACAATGAGCTGGAGGAGTTGGCTGCGCGTTTTGTTGEST: gi|78083290|gb|DV511683.1|DV511683
genomic: GTCTCTCAAGAAATACTCAGCAAGTACCTGCAGTGTTCGTGTCGATGGCGgtaggataca ... atcgtatcagGTACGACCAAGCTTCACAATGAGCTGGAGGAGTTGGCTGCGCGTTTTGTTG
EST: GTCTCTCAAGAAATACTCAGCAAGTACCTGCAGTGTTCGTGTCGATGGCG GTACGACCAAGCTTCACAATGAGCTGGAGGAGTTGGCTGCGCGTTTTGTTG
genomic: GTCTCTCAAGAAATACTCAGCAAGTACCTGCAGTGTTCGTGTCGATGGCGgtaggataca ... atcgtatcagGTACGACCAAGCTTCACAATGAGCTGGAGGAGTTGGCTGCGCGTTTTGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACCTTGGCTTTGCTGCAGCAGATGAGTATTGCACACCACGTGTTATTGAGTCTCTCAAGAAATACTCAGCAAGTACCTGCAGTGTTCGTGTCGATGGCGgtaggatacattctcaacatgcttatatgtttacaaatttttaagaacaaaaactactaaactgatccctttcatatcgtatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG