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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACAAAGGAAGGTATACTCTCTGCAATTGATGATGGGAAGTCTGAGGGAGGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGGgtgagtttggcaacttaactagtaggtttcatatttgtatactctaataaatgttggattctttctaccatttgcattaccatatgttatatcttctcta...

Basic information

species Zea mays
transcript GRMZM2G152757_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152757_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os12g08280.1 (Oryza sativa), 5'ss of exon 4
TTACAAAGGAAGGTATACTCTCTGCAATTGATGATGGGAAGTCTGAGGGAGGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGGgtgagtttggcaacttaactag-taggtttcatatttgtatactctaataaatgttggattctttctaccatttgcattaccatatgttatatcttctcta
|  | ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||| ||||| ||||| || |||||||||||||||||   || ||| |   | |||| || | |    | ||  | | ||      |  | |     |||   ||  |     ||    |||    || 
TCTCTAAGGAAGGTATCCTCTCTGCAATTGACGATGGCAAGTCTGAGGGAGGTCCATCTGGGCGACACTGGGTGCTAGATCCAATTGATGGGACTAAAGGgtgagtttgctgacctaaatctctgggttgcagaatatgctgctgcagtcaaaacataaaacatcagttcatccccaccattcactgcacaatcagaact-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15208795|gb|BI430679.1|BI430679
EST:     GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGG                         TTTCTTGAGGGGCGACCAATATGCCATT
genomic: GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGGgtgagtttgg ... cctgaatcagTTTCTTGAGGGGCGACCAATATGCCATT
EST: gi|211084814|gb|FL392700.1|FL392700
EST:     GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGG                         TTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
genomic: GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGGgtgagtttgg ... cctgaatcagTTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
EST: gi|13316247|gb|BG410694.1|BG410694
EST:     GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGG                         TTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
genomic: GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGGgtgagtttgg ... cctgaatcagTTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
EST: gi|211027069|gb|FL381517.1|FL381517
EST:     GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGG                         TTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
genomic: GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGGgtgagtttgg ... cctgaatcagTTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
EST: gi|211140497|gb|FL400397.1|FL400397
EST:     GGTCCATCTGGACGACATTGGGTGCTTAATCCGATTGACGGTACTAAAGG                         TTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
genomic: GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGGgtgagtttgg ... cctgaatcagTTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
EST: gi|211426998|gb|FL426768.1|FL426768
EST:     GGTCCATCTGGACGACATTGGGTGCTTAATCCGATTGACGGTACTAAAGG                         TTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
genomic: GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGGgtgagtttgg ... cctgaatcagTTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
EST: gi|71435796|gb|DR816846.1|DR816846
EST:     GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGG                         TTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
genomic: GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGGgtgagtttgg ... cctgaatcagTTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
EST: gi|67013898|gb|CO442647.1|CO442647
EST:     GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGG                         TTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
genomic: GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGGgtgagtttgg ... cctgaatcagTTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
EST: gi|32841437|gb|CD981118.1|CD981118
EST:     GGTACT-AAGG                         TTTCTTGAGGGGCGACCAATATGCCA-TGCCATTGGCTCTGCTTGATGAAG
genomic: GGTACTAAAGGgtgagtttgg ... cctgaatcagTTTCTTGAGGGGCGACCAATATGCCATTG-CATTGGCTCTGCTTGATGAAG
EST: gi|211225357|gb|FL370946.1|FL370946
EST:     GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGG                         TTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAANG
genomic: GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGGgtgagtttgg ... cctgaatcagTTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
EST: gi|50326445|gb|CO521571.1|CO521571
EST:     GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGG                         TTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
genomic: GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGGgtgagtttgg ... cctgaatcagTTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
EST: gi|32842117|gb|CD981798.1|CD981798
EST:     GGTACTAAAGG                         TTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
genomic: GGTACTAAAGGgtgagtttgg ... cctgaatcagTTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
EST: gi|149037768|gb|EE155430.2|EE155430
EST:     GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGG                         TTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
genomic: GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGGgtgagtttgg ... cctgaatcagTTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
EST: gi|93012264|gb|EB637784.1|EB637784
EST:     GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGG                         TTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
genomic: GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGGgtgagtttgg ... cctgaatcagTTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
EST: gi|211131362|gb|FL428332.1|FL428332
EST:     GGTCCATCTGGACGACATTGGGTGCTTAATCCGATTGACGGTACTAAAGG                         TTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
genomic: GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGGgtgagtttgg ... cctgaatcagTTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
EST: gi|13316248|gb|BG410695.1|BG410695
EST:     GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGG                         TTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
genomic: GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGGgtgagtttgg ... cctgaatcagTTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
EST: gi|76016036|gb|DT943206.1|DT943206
EST:     GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGG                         TTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
genomic: GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGGgtgagtttgg ... cctgaatcagTTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG
EST: gi|211217102|gb|FL383485.1|FL383485
EST:     GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGG                         TTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAANG
genomic: GGTCCATCTGGACGACATTGGGTGCTTGATCCGATTGACGGTACTAAAGGgtgagtttgg ... cctgaatcagTTTCTTGAGGGGCGACCAATATGCCATTGCATTGGCTCTGCTTGATGAAGG