1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CACCCCGTTTCAACTCAAGTACTGGACTCACCCTAAGGACGATCACTACGACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtatgttctcgaatatgagctcgtcagcgagacagcgacgacaagaagagctatgattattggagggagctatggttatttaaatccttctttttgtcgtggattatcatctgcaatattcaattcag
species | Zea mays |
transcript | GRMZM2G152477_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCEST: gi|149107111|gb|EE189001.2|EE189001
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGC
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|50335510|gb|CO530636.1|CO530636
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACCATCTGCTCAAG GATTTGGACGGGGCCAEST: gi|71767234|gb|DR965171.1|DR965171
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCA
EST: CTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTNCA-G GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCEST: gi|148966045|gb|EE016979.2|EE016979
genomic: CTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCT-CAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCC
EST: GGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|76289549|gb|DV029117.1|DV029117
genomic: GGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|32845008|gb|CD984689.1|CD984689
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|78087669|gb|DV516062.1|DV516062
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|74239383|gb|DT647297.1|DT647297
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|37426126|gb|CF650813.1|CF650813
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|71432358|gb|DR813408.1|DR813408
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGGAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|32845140|gb|CD984821.1|CD984821
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|76012119|gb|DT939289.1|DT939289
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|32844554|gb|CD984235.1|CD984235
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|71767917|gb|DR965854.1|DR965854
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCCAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGGGGAAGGTTEST: gi|78114010|gb|DV532399.1|DV532399
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTT
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|32844045|gb|CD983726.1|CD983726
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGTCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|76012840|gb|DT940010.1|DT940010
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|37393857|gb|CF634195.1|CF634195
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|76280616|gb|DV020184.1|DV020184
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|76012839|gb|DT940009.1|DT940009
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: AGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|78114011|gb|DV532400.1|DV532400
genomic: AGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACTTCGACTGEST: gi|78105515|gb|DV523933.1|DV523933
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|32835913|gb|CD975591.1|CD975591
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|18162089|gb|BM331928.1|BM331928
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: CTGGAGAGGGGTGGCGCGCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|149014265|gb|EE043835.2|EE043835
genomic: CTGGAGAGGGGTGGCGC-CTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|89758274|gb|DY687518.1|DY687518
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTGEST: gi|148986094|gb|EE029903.2|EE029903
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGTTGCCGTG
EST: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAG GATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGGGTTGCCGT
genomic: ACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtat ... ttcaattcagGATTTGGACGGGGCCATGAAGACATCGACTGCGGCGTGGAAGG-TTGCCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACCCCGTTTCAACTCAAGTACTGGACTCACCCTAAGGACGATCACTACGACTGGAGAGGGGTGGCGCCTCGGGAAAACTACATAAACAATCTGCTCAAGgtgcgtgtatgttctcgaatatgagctcgtcagcgagacagcgacgacaagaagagctatgattattggagggagctatggttatttaaatccttctttttgtcgtggattatcatctgcaatattcaattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG