Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTTCCGGTCGGCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAGgtacatagtacttacgacggcgacgaggccagccacctctcgctcaccgaaacttctgtagcgtgcatctactgtactgtgcctgcaactgggcaggcagtaccgacctgagctgacatgtttttctttcttttcaccgcccttttgcgcgctggctggtgtggcgtggctgggctcctcggcgatgtcgcgagcag

Basic information

species Zea mays
transcript GRMZM2G152135_T06
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152135_T06 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g48880.1 (Oryza sativa), 5'ss of exon 4
GGCCTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTTCCGGTCGGCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAGgtacatagtacttacgacggcgacgaggccagccacctctcgctcaccgaaacttctgtagcgtgcatctactgtactgtgcctgcaactgggcaggcagtaccgacctgagctgacatgtttttctttcttttcaccgcccttttgcgcgctggctggtgtggcgtggctgggctcctcggcgatgtcgcgagcag
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||  | |||||||||||||| |||||||| ||  | ||||||||||           |||  | |   |  ||   || | |    ||||   ||| ||    |  ||  |||||         || | |||||  ||  |||    || |  |||||    ||| | | | |   |||   |                                                        
GGCCTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTCCCCGTCGGCCCCATCGCGAATGTGCCCTACTTCCGGCGAGTGGCCGCGGCCCACAAGgtacga---------gaccaccagctgctcactgacgtttactgcaccactactactagtccacgctgctacta--------ctactactggctagagagtgt--acttttgctgat---tttctttgtgtggccacgagcag------------------------------------------------------

upper sequence: GRMZM2G152135_T06 (Zea mays), 5'ss of exon 4
lower sequence: Vv02s0025g00240.t01 (Vitis vinifera), 5'ss of exon 5
GGCCTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTTCCGGTCGGCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAGgtacatagtacttacgacggcgacgaggccagccacctctcgctcaccgaaacttctgtagcgtgcatctactgtactgtgcctgcaactgggcaggcagtaccgacctgagctgacatgtttttctttcttttcaccgcccttttgcgcgctggctggtgtggcgtggctgggctcctcggcgatgtcgcgagcag
|||||||||||| |||||||||||||| |||||||| || || || ||||| ||||||||| |||| || ||  | ||   ||| ||| |  | ||| | ||| ||  |||  ||  |  | || ||   |              ||| ||| |            || ||    ||| |   |   | |   |||| | ||   |  ||   | |  | || |   |   || ||                                                             
GGCCTACATGTTTGTCCACGACGGCCTTGTCCACCGTCGATTCCCTGTCGGACCCATCGCCAACGTCCCTTATCTACGAAAAGTAGCTTCGGCCCACCAAgtaaatcatac--accccacctacaagctgaa-------------accaaaattctca--------atttatatcactat--ttatcaattatcaggaaatattcatatg---taatttcttgtatgtggattgcag------------------------------------------------------------

upper sequence: GRMZM2G152135_T06 (Zea mays), 5'ss of exon 4
lower sequence: EDO99380 (Chlamydomonas reinhardtii), 5'ss of exon 5
GGCCTACATGTTCGTCCACGACGGCCTGGTCCACCGCCGCTTTCCGGTCGGCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAGgtacatagtacttacgacggcgacgaggccagccacctctcgctcaccgaaacttctgtagcgtgcatctactgtactgtgcctgcaactgggcaggcagtacc-gacctgagctgacatgtttttctttcttttcaccgcccttttgcgcgctggctggtgtggcgtggctgggctcctcggcgatgtcgcgagcag
            | ||  ||  || |||| | | | | ||| | |||       ||||||| || ||  || |  |  | |  ||| |||  |||        | | |  |  |   || | ||| |          | |||    | |           | |||| |   |||  ||| |       |||||| |   || |  |  ||| || |   |||  ||                                                                        
------------CTTCGGCGCGGGTCTGGGC-ATCAC-GCTGTTCGG-------CATCGCCTACATGTTCTTCCACGACGGCCTGG-TGCACCGCCGCTTCCCCGTGGGGCCCAT--CGCCAACgtgagtg--tgtgtgtcgggggctgggctgggctgggtgtgcttgggctgggctgcgtgctaggctgggctgtgtgtgcttgggctgggc-ggtgtgtgcttg-----------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211378788|gb|FL471300.1|FL471300
EST:     GCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAG                         ATACMCCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
genomic: GCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAGgtacatagta ... tcgcgagcagATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
EST: gi|211485805|gb|FL428178.1|FL428178
EST:     GCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAG                         ATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
genomic: GCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAGgtacatagta ... tcgcgagcagATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
EST: gi|211062532|gb|FL481127.1|FL481127
EST:     GCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAG                         ATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
genomic: GCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAGgtacatagta ... tcgcgagcagATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
EST: gi|15554267|gb|BI644265.1|BI644265
EST:     GCCGAGTGGCTGCCTCGCACAAG                         ATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
genomic: GCCGAGTGGCTGCCTCGCACAAGgtacatagta ... tcgcgagcagATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
EST: gi|149107956|gb|EE292313.2|EE292313
EST:     GCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAG                         ATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
genomic: GCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAGgtacatagta ... tcgcgagcagATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
EST: gi|211200344|gb|FL437129.1|FL437129
EST:     GCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAG                         ATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
genomic: GCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAGgtacatagta ... tcgcgagcagATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
EST: gi|149204930|gb|ES700526.1|ES700526
EST:     GCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAG                         ATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
genomic: GCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAGgtacatagta ... tcgcgagcagATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
EST: gi|37392032|gb|CF633262.1|CF633262
EST:     GCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAG                         ATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
genomic: GCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAGgtacatagta ... tcgcgagcagATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
EST: gi|211354968|gb|FL469254.1|FL469254
EST:     CCCATCGCCRACGTGCCCTTACTTCCGCCGANGTGGCTGCCTCGCACAAG                         ATACMCCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
genomic: CCCATCGCCGACGTGCCC-TACTTCCGCCGA-GTGGCTGCCTCGCACAAGgtacatagta ... tcgcgagcagATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
EST: gi|211070680|gb|FL369853.1|FL369853
EST:     GCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAG                         ATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
genomic: GCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAGgtacatagta ... tcgcgagcagATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
EST: gi|211131936|gb|FL382998.1|FL382998
EST:     GCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAG                         ATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
genomic: GCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAGgtacatagta ... tcgcgagcagATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
EST: gi|60342760|gb|DN209733.1|DN209733
EST:     GCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAG                         ATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
genomic: GCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAGgtacatagta ... tcgcgagcagATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
EST: gi|148929072|gb|EC874391.2|EC874391
EST:     GCCCCATCGCCGACGTGCCCTACTTCCGCGGAGTGGGTGCCTCGCACAAG                         ATACACCACATGGACAAGTTCGGCGGGGTCCCGTATGGGCTCTTCCTGGGA
genomic: GCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAGgtacatagta ... tcgcgagcagATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
EST: gi|194717072|gb|FK934225.1|FK934225
EST:     GCCCCATCGTCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAG                         ATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA
genomic: GCCCCATCGCCGACGTGCCCTACTTCCGCCGAGTGGCTGCCTCGCACAAGgtacatagta ... tcgcgagcagATACACCACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGA