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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGTCCCACTCTACAATTTCAGCTCCATATATACTTACCTGATGGCTTCACCTAAAAGTTTTGTAGACAGgtaatgtggaaaaaccatgtaatttctcgtttgttcattttgatcttctccacaatcttcaatatttcagttatttgttctcaaatataataagttagtcttgcag

Basic information

species Zea mays
transcript GRMZM2G152057_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152057_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g50040.1 (Oryza sativa), 5'ss of exon 4
CTGTGTCCCACTCTACAATTTCAGCTCCATATATACTTACCTGATGGCTTCACCTAAAAGTTTTGTAGACAGgtaat-gtggaaaaaccatgtaatttctcgtttgttcat-tttgatcttctccacaatcttcaatatttcagttatttgttctcaaatataataagttagt--cttgcag
|||||| || || ||||||||||||| ||||||||||||| ||||||||||  |||||||||||||||||||||||  ||  ||| | ||| | |  ||| |   |||||| |||| || | |   | |  | | |||||||| || ||  ||||||||  || || |||  |   || |||
CTGTGTTCCTCTGTACAATTTCAGCTACATATATACTTACTTGATGGCTTCGACTAAAAGTTTTGTAGACAGgtaagagtaaaaagatcatctgaaatcttgcaagttcatgtttgttcctataggctacatgccatatttcaatttttatttctcaaaattagtatgttgatattttccag

upper sequence: GRMZM2G152057_T01 (Zea mays), 5'ss of exon 4
lower sequence: EFJ20454 (Selaginella moellendorffii), 5'ss of exon 4
CTGTGTCCCACTCTACAATTTCAGCTCCATATATACTTACCTGATGGCTTCACCTAAAAGTTTTGTAGACAGgtaatgtggaaaaaccatgtaatttctcgtttgttcattttgatcttctccacaatcttcaatatttcagttatttgttctcaaatataataagttagtcttgcag
 || || ||  | |||| ||| |  | ||||||    ||  ||||||||||||||||||||||||||||||||| |      |||    |   ||||  || |     |   || | || | | |  |||   ||    |||                                    
TTGCGTACCCTTGTACAGTTTTACGTTCATATACGAGTATTTGATGGCTTCACCTAAAAGTTTTGTAGACAGgtgagccaccaaactttttccattttccgctgacaaacggtgttgttgtgc-ccgtctgtgatgcc-cag------------------------------------

upper sequence: GRMZM2G152057_T01 (Zea mays), 5'ss of exon 4
lower sequence: EFJ28434 (Selaginella moellendorffii), 5'ss of exon 4
CTGTGTCCCACTCTACAATTTCAGCTCCATATATACTTACCTGATGGCTTCACCTAAAAGTTTTGTAGACAGgtaatgtggaaaaaccatgtaatttctcgtttgttcattttgatcttctccacaatcttcaatatttcagttatttgttctcaaatataataagttagtcttgcag
 || || ||  | |||| ||| |  | ||||||    ||  ||||||||||||||||||||||||||||||||| |      |||    |   ||||  || |     |   || | || | | |  |||   ||    |||                                    
TTGCGTACCCTTGTACAGTTTTACTTTCATATACGAGTATTTGATGGCTTCACCTAAAAGTTTTGTAGACAGgtgagccaccaaactttttccattttccgctgacaaacggtgttgttgtgc-ctgtctgtgatgcc-cag------------------------------------