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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACCATAGCTACAAGGATCCCGTAACTGAATTTCTGGAATGCTTATATGTTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttgaggttgtttttcctgcaattttcaagtcctcaattttgttattcacgtgtgtgcttcttgaattatggaaaaagcctgaaagacaacacat...

Basic information

species Zea mays
transcript GRMZM2G151549_T01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60354741|gb|DN221714.1|DN221714
EST:     TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG                         GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: gi|211499749|gb|FL295237.1|FL295237
EST:     TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG                         GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: gi|211496877|gb|FL295235.1|FL295235
EST:     TTAACTATGATTTTKATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG                         GTTATACTCAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: gi|67023707|gb|CO452456.1|CO452456
EST:     TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG                         GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: gi|60354489|gb|DN221462.1|DN221462
EST:     TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG                         GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: gi|71772603|gb|DR970531.1|DR970531
EST:     TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG                         GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: gi|148929371|gb|EC875323.2|EC875323
EST:     TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG                         GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: gi|5915274|gb|AW052915.1|AW052915
EST:     TATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG                         GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
genomic: TATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: gi|211221048|gb|FL468686.1|FL468686
EST:     GTGCTCAACAGAAACTCATAGAGTGTGAGCAG                         GTTATACTCAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
genomic: GTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: gi|78113788|gb|DV532177.1|DV532177
EST:     TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG                         GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: gi|61119784|gb|DN560745.1|DN560745
EST:     TCATAGAGTGTGAGCAG                         GTTATACTGAATGNATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTT
genomic: TCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATG-ATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTT
EST: gi|6020868|gb|AW065796.1|AW065796
EST:     TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG                         GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: gi|148988253|gb|EE031627.2|EE031627
EST:     TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG                         GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: gi|6056588|gb|AW090993.1|AW090993
EST:     TTAACTATGATTNTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG                         GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: gi|6194537|gb|AW146641.1|AW146641
EST:     TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG                         GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
EST: gi|211499748|gb|FL295236.1|FL295236
EST:     TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAG                         GTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT
genomic: TTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttga ... acttttctagGTTATACTGAATGATCCATTCCTGGGAAAGCGCATTGAAGAGGGAAATTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCACCATAGCTACAAGGATCCCGTAACTGAATTTCTGGAATGCTTATATGTTAACTATGATTTTGATGGTGCTCAACAGAAACTCATAGAGTGTGAGCAGgtaactttgaggttgtttttcctgcaattttcaagtcctcaattttgttattcacgtgtgtgcttcttgaattatggaaaaagcctgaaagacaacacat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagacaa