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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGAAAGACTTCTCTAACAAAAGTGGAGCTGAAGGGAGCAGGAGTGCTGAAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAGgtttatctcttgcgtgatcattaacagaagcaaaaatcatccttttgtttctttatgttttccgaaaaagaaaaaagggggaaagctccttgtgtagtgt...

Basic information

species Zea mays
transcript GRMZM2G151268_T04
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151268_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g01170.1 (Oryza sativa), 5'ss of exon 4
ACTGAAAGACTTCTCTAACAAAAGTGGAGCTGAAGGGAGCAGGAGTGCTGAAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAGgtttatctcttgcgtgatcattaacagaagcaaaaatcatccttttgtttctttatgt-tttccgaaaaagaaa----aaagggggaaagctccttgtgtagtgt
| | || || || ||||||||||| |||||||||||||||||||||||||||||||||||  ||||| |||||||||| ||||| ||||| |||||||||||    |||||||    |||    |  | ||| | |  ||     ||| | |  |  | |||| |   | | ||     |   |   ||  ||| ||||| |   
ATTAAAGGATTTTTCTAACAAAAGCGGAGCTGAAGGGAGCAGGAGTGCTGAAAGTGGTCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGgta---ctcttgctaactcagagtctcaggcagacagtatataaatgtatatggaaatctttctgtttatggaattttgatttgattaaaatccctgtgttgc--

upper sequence: GRMZM2G151268_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os12g01170.1 (Oryza sativa), 5'ss of exon 4
ACTGAAAGACTTCTCTAACAAAAGTGGAGCTGAAGGGAGCAGGAGTGCTGAAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAGgtttatctcttgcgtgatcattaacagaagcaaaaatcatccttttgtttctttatgt-tttccgaaaaagaaa----aaagggggaaagctccttgtgtagtgt
| | || || || ||||||||||| |||||||||||||||||||||||||||||||| ||  ||||| |||||||||| ||||| ||||| |||||||||||    |||||||    |||    |  | ||| | |  ||     ||| | |  |  | |||| |   | | ||     |   |   ||  ||| ||||| |   
ATTAAAGGATTTTTCTAACAAAAGCGGAGCTGAAGGGAGCAGGAGTGCTGAAAGTGGCCCCATGCTTCTAGATGTTCTTGAAGGATATCTCAAATATGAGgta---ctcttgctaactcagagtctcaggcagacagtatataaatgtatatggaaatctttctgtttatggaattttgatttgattaaaatccctgtgttgc--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22935937|gb|BU572212.1|BU572212
EST:     AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAG                         AATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
genomic: AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAGgtttatctct ... ttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
EST: gi|45847355|gb|CN071298.1|CN071298
EST:     TGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAG                         AATTTGTCTCAAGCAAGGATGGCCGGCAGGAGGATGATGAGTTCAGAATCT
genomic: TGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAGgtttatctct ... ttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
EST: gi|78122445|gb|DV540829.1|DV540829
EST:     AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAG                         AATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
genomic: AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAGgtttatctct ... ttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
EST: gi|29945213|gb|CB815527.1|CB815527
EST:     AAAGTGGTCCACTGCTTTTAGATGGTCTCGAAGGGTATCTGAAATATGAG                         AATTTGTCTCAAGCAAG
genomic: AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAGgtttatctct ... ttttggtcagAATTTGTCTCAAGCAAG
EST: gi|21432449|gb|BQ547939.1|BQ547939
EST:     AAAGTGGTCCCCTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAG                         AATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
genomic: AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAGgtttatctct ... ttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
EST: gi|60359679|gb|DN226652.1|DN226652
EST:     AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAG                         AATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
genomic: AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAGgtttatctct ... ttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
EST: gi|32864387|gb|CF004069.1|CF004069
EST:     AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAG                         AATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
genomic: AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAGgtttatctct ... ttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
EST: gi|23357627|gb|BU645276.1|BU645276
EST:     AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAG                         AATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
genomic: AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAGgtttatctct ... ttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
EST: gi|60399944|gb|DN232751.1|DN232751
EST:     AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAG                         AATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
genomic: AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAGgtttatctct ... ttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
EST: gi|26557650|gb|CA829885.1|CA829885
EST:     AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATTTGAAATATGAG                         AATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
genomic: AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAGgtttatctct ... ttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
EST: gi|21432197|gb|BQ547687.1|BQ547687
EST:     AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAG                         AATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
genomic: AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAGgtttatctct ... ttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
EST: gi|113701244|gb|EE678748.1|EE678748
EST:     AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAG                         AATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
genomic: AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAGgtttatctct ... ttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
EST: gi|21809549|gb|BQ667867.1|BQ667867
EST:     TGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAG                         AATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
genomic: TGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAGgtttatctct ... ttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
EST: gi|211194039|gb|FL029192.1|FL029192
EST:     AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAG                         AATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
genomic: AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAGgtttatctct ... ttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
EST: gi|89106102|gb|DY576319.1|DY576319
EST:     AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAG                         AATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
genomic: AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAGgtttatctct ... ttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
EST: gi|60348471|gb|DN215444.1|DN215444
EST:     AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAG                         AATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
genomic: AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAGgtttatctct ... ttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
EST: gi|67042990|gb|CO469245.1|CO469245
EST:     AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAG                         AATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
genomic: AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAGgtttatctct ... ttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
EST: gi|29945211|gb|CB815526.1|CB815526
EST:     AAAGTGGTCCNCTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAG                         AATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
genomic: AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAGgtttatctct ... ttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
EST: gi|211191650|gb|FL029191.1|FL029191
EST:     AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAG                         AATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
genomic: AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAGgtttatctct ... ttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
EST: gi|26557724|gb|CA829959.1|CA829959
EST:     AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAG                         AATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT
genomic: AAAGTGGTCCACTGCTTTTAGATGTTCTCGAAGGTTATCTGAAATATGAGgtttatctct ... ttttggtcagAATTTGTCTCAAGCAAGGATGGGCGGCAGGAGGATGATGAGTTCAGAATCT