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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGATGAGTTCAGAATCTGATCCATCACTAAATGCTGAACATCGGAGCATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatactgttgtgccattgtaattttgtacatgtatttgtttttgacatcatatatttatatgcgagtgtgacatattactttgaaattggcag

Basic information

species Zea mays
transcript GRMZM2G151268_T02
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12971760|gb|BG267644.1|BG267644
EST:     ATGAGTAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|4647161|gb|AI622236.1|AI622236
EST:     ATGAGGAGGGCACCATCAGCATCAG-TGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|91049337|gb|EB159755.1|EB159755
EST:     CACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: CACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|32909956|gb|CF014768.1|CF014768
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|60348471|gb|DN215444.1|DN215444
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|21809549|gb|BQ667867.1|BQ667867
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|47961828|gb|CN844537.1|CN844537
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATTTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|94478768|gb|EB707726.1|EB707726
EST:     CACCCTCAGCATCAGATGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: CACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|60399998|gb|DN232805.1|DN232805
EST:     TCAGCATCATTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTTGCAGCAGGCATCAG
genomic: TCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|28982756|gb|BQ538331.2|BQ538331
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|15323531|gb|BI478753.1|BI478753
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|211191649|gb|FL029190.1|FL029190
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCCCCTAT--GGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|60400202|gb|DN233009.1|DN233009
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|74238104|gb|DT646018.1|DT646018
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|45847355|gb|CN071298.1|CN071298
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGATGATGAGTTCAGAATCTGATCCATCACTAAATGCTGAACATCGGAGCATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatactgttgtgccattgtaattttgtacatgtatttgtttttgacatcatatatttatatgcgagtgtgacatattactttgaaattggcag

- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG