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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATCAAGGGAACACTGCTTTGAAGCGAGTGGTTGAGTCTATTGCTAATGGTGATTCCCATGTTCCATTCAGGGACAGCAAACTCACAATGCTACTACAGgtacactactacaaaagattacatttattgatactgcctctcccccctaatgattatctaaatatttccttcattgcatttcag

Basic information

species Zea mays
transcript GRMZM2G150984_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150984_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g56540.1 (Oryza sativa), 5'ss of exon 4
CAATCAAGGGAACACTGCTTTGAAGCGAGTGGTTGAGTCTATTGCTAATGGTGATTCCCATGTTCCATTCAGGGACAGCAAACTCACAATGCTACTACAGgtacactactacaaaagattacatttattgatactgcctctcccccctaa--------tgattatctaaatatt----tccttcattgcatttcag
 || ||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||||||  | |||||||| |||||||||||  | ||||||||  | |  ||||  | |||||  | |||||    |    |    ||        || | |  |||    |    || | |||    ||||||
TAACCAAGGGAACACGGCTTTGAAACGAGTGGTTGAGTCCATTGCTAATGGTGACTCCCATGTTCCATTTCGAGACAGCAAGCTCACAATGCTCTTGCAGgtacaagattctaaaatttcacattcctcgatacaaatttatactgtaaaattaaagctgctaacgtaatgcctacgatcttccatgaattttcag

upper sequence: GRMZM2G150984_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA20G34970.1 (Glycine max), 5'ss of exon 4
CAATCAAGGGAACACTGCTTTGAAGCGAGTGGTTGAGTCTATTGCTAATGGTGATTCCCATGTTCCATTCAGGGACAGCAAACTCACAATGCTACTACAGgtacac-------tactacaaaagattacattt----attgatactgcctctccccc------ctaatgattatctaaatatttccttcattgcatttcag--
||||||||| || |  ||  ||||| ||||||| ||||| ||||| ||||| ||||| ||||| || || |||||||||||||| || ||||| || |||||| |        |  |  ||  || |  |||     ||| ||| |  || |            || ||||| |    |  ||| || | || | |||     
CAATCAAGGAAATATAGCGCTGAAGAGAGTGGTGGAGTCCATTGCAAATGGCGATTCACATGTGCCTTTTAGGGACAGCAAACTTACCATGCTTCTGCAGgtaaatattgtagtcttttaattgagtgaattgctagattcatattctctgttatttgaagttttattgattgtgagtactttttctgctttccctttttaag

upper sequence: GRMZM2G150984_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA10G32610.1 (Glycine max), 5'ss of exon 5
CAATCAAGGGAACACTGCTTTGAAGCGAGTGGTTGAGTCTATTGCTAATGGTGATTCCCATGTTCCATTCAGGGACAGCAAACTCACAATGCTACTACAGgtacac--tactacaaaagattacatttattgat------actgcctctcccccctaatgatt------atctaaatatttcctt---cattgcatttcag--
||||||||| || |  ||| ||||| ||||||| ||||| ||||| ||||| ||||| ||||| || ||||||||||||||||| || ||||| || |||||| |   || |        ||   |  |||| |      |    || |      | | | ||      || | |||||||  ||    ||| | |||     
CAATCAAGGAAATATAGCTCTGAAGAGAGTGGTGGAGTCCATTGCAAATGGCGATTCACATGTGCCTTTCAGGGACAGCAAACTTACCATGCTTCTGCAGgtaaataatagtctttttagttgagtcaattgctgaattcatgttctatgttatttgaagttttatttgatgtgaatatttttttgtatattccctttttaag