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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTAGGGACTGTTGATGGAGGGAGACCGCCAACAAAAATAAAGACTGATCTTAAAAAACCCATTGTTAACCTGGCTTGCCATCCCCGCCTCCCTGTCTTGgtaaacagccatatctttacttttttctgttttttgattttatgttgtcatgtttctgcctttacgcatttctgaccaagcttatgatttag

Basic information

species Zea mays
transcript GRMZM2G150772_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150772_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os09g24260.1 (Oryza sativa), 5'ss of exon 4
TGTAGGGACTGTTGATGGAGGGAGACCGCCAACAAAAATAAAGACTGATCTTAAAAAACCCATTGTTAACCTGGCTTGCCATCCCCGCCTCCCTGTCTTGgtaaa--cagccatatctttactttttt--------ctgttttttgatttta-------------tgttgtcatgtttctgccttt---acgcatttctgaccaagcttatgatttag-
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TGTTGGGACTGTTGAAGGAGGGAGGCCGCCAACAAAAATAAAGACTGATCTTAAAAAGCCTGTTGTTAACCTGGCTTGCCATCCTCGCCTTCCTGTCCTGgtaaatacaatcagagctttaccttttggctggtgattgcactgcagtcctacacaaggttgtcttgttgttgtgtatctgtatttgtcatatgttgatgtgcaaaattataatttcag

upper sequence: GRMZM2G150772_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv00s0379g00020.t01 (Vitis vinifera), 5'ss of exon 3
TGTAGGGACTGTTGATGGAGGGAGACCGCCAACAAAAATAAAGACTGATCTTAAAAAACCCATTGTTAACCTGGCTTGCCATCCCCGCCTCCCTGTCTTGgtaaacagccatatct---ttacttttttctgttt----tttgattt-tatgttgtcatgtttctgc----ctttacgcatttctgaccaagcttatgatttag-------------------------
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TGTTGGAACTGTTGAAGGGGGGAGAGCACCAACAAAAATAAAGACAGATCTGAAGAAACCTGTTGTCAATCTTGCTTGCCACCCCCGCCTTCCTGTCCTGgtaacatgtttaatttggttgagattgtcctatttagcaccggatatgcatggtatcttatgtgtgcaaaccttttgattcttgcgctgatggatacg-tttagcaactttttgcctttcatttttcag