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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTTTATCACTGTTTCTTCTATTCAAGTTTCTCTCAAAAGACTTGGTCAACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaggttcattttttttttcttgtaacagctttttcagacatgttaagctgtttagttgctctacttatgagtaccgttttatgcag

Basic information

species Zea mays
transcript GRMZM2G150251_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150251_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT2G03120.1 (Arabidopsis thaliana), 5'ss of exon 3
TGCTTTTATCACTGTTTCTTCTATTCAAGTTTCTCTCAAAAGACTTGGTCAACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaggttcattttttttttcttgtaacagctttttcagacatgttaagctgtttagttgctctact-tatgagtaccgttttatgcag
||||| | ||||| ||  |  | ||||||||||||||||| |||||||| || |||||||| || || ||||| ||  |||| || ||||| ||||| ||||| ||   || | |   || ||       |||||   |  |||| | ||||   ||      |    | |  ||    | | |||||
TGCTTCTCTCACTTTTCTTATTGTTCAAGTTTCTCTCAAAGGACTTGGTTAATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtc--ttatctaaatcatgccttttgttttttt-atttgtttatctgt--ggtcaagtcatgacacggttatgtgtgtttgcag

upper sequence: GRMZM2G150251_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 5'ss of exon 4
TGCTTTTATCACTGTTTCTTCTATTCAAGTTTCTCTCAAAAGACTTGGTCAACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaggttcattttttttttcttgtaacagctttttcag-acatgtta-agctgtttag---ttgctctactta--tgagtaccgttttatgcag-----------------------
|||| |||||||| || ||||| ||||||||||| |||||||||||||| || ||||| || ||   |||||| ||  | || || ||  | ||||| ||||| |||| ||   | |   |  |   |   |  | |  |  || || |  | |||||   | | |  |  |   |  || |  | |    ||                        
TGCTGTTATCACTATTCCTTCTCTTCAAGTTTCTATCAAAAGACTTGGTTAATGCTGTACTGACATGCTACTTCTTTGTGCTTGGGATCATCGCTCTTTCgtatgttctttccgtatggatcatgctactatgcttaatatttgatataattatttagaaatagtttcatgtggtttggttcattatctcacattatctttcttctattttctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211138912|gb|FK978960.1|FK978960
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         TGCAACACTGCTTCCTTCTATAAAAC
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaggttcat ... ttttatgcagTGCAACACTGCTTCCTTCTATAAAAC
EST: gi|78123105|gb|DV541489.1|DV541489
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         TGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGAAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaggttcat ... ttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|93282675|gb|EB674939.1|EB674939
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         TGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaggttcat ... ttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|60353103|gb|DN220076.1|DN220076
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         TGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaggttcat ... ttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|32837706|gb|CD977384.1|CD977384
EST:     GCTGTGCTCACTGCCTACTTTTTCATTCTAGGCA-TGNTTGCTCTCTC                         G
genomic: GCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTG-TTGCTCTCTCgtaggttcat ... ttttatgcag-
EST: gi|32837706|gb|CD977384.1|CD977384
EST:     GCTGTGCTCACTGCCTACTTTTTCATTCTAGGCA-TGNTTGCTCTCTC                         G
genomic: GCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTG-TTGCTCTCTCgtaggttcat ... ttttatgcag-
EST: gi|32837706|gb|CD977384.1|CD977384
EST:     GCTGTGCTCACTGCCTACTTTTTCATTCTAGGCA-TGNTTGCTCTCTC                         G
genomic: GCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTG-TTGCTCTCTCgtaggttcat ... ttttatgcag-
EST: gi|32837706|gb|CD977384.1|CD977384
EST:     GCTGTGCTCACTGCCTACTTTTTCATTCTAGGCA-TGNTTGCTCTCTC                         G
genomic: GCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTG-TTGCTCTCTCgtaggttcat ... ttttatgcag-
EST: gi|32837706|gb|CD977384.1|CD977384
EST:     GCTGTGCTCACTGCCTACTTTTTCATTCTAGGCA-TGNTTGCTCTCTC                         G
genomic: GCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTG-TTGCTCTCTCgtaggttcat ... ttttatgcag-
EST: gi|76020573|gb|DT947743.1|DT947743
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         TGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaggttcat ... ttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|30031840|gb|CB833691.1|CB833691
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         TGCAACACTGCTTCCTTCTATAAA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaggttcat ... ttttatgcagTGCAACACTGCTTCCTTCTATAAA
EST: gi|60349110|gb|DN216083.1|DN216083
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         TGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaggttcat ... ttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|76282341|gb|DV021909.1|DV021909
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         TGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaggttcat ... ttttatgcagTGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA