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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAACATTGACTGACACACCTGCCATCCTTGTGTTTGTTGCTCGAAAGGTTCACAGGAAGTGGCTCAGCCCTACTCAATGTCTTCCAGGTGCCCTTGAGgtaggcacgattttgtttcatgtagtttacaaagttatttaagccatctgaatcacatacagtttcgttgcattccataaacag

Basic information

species Zea mays
transcript GRMZM2G150212_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150212_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os08g31470.1 (Oryza sativa), 5'ss of exon 2
AGGAACATTGACTGACACACCTGCCATCCTTGTGTTTGTTGCTCGAAAGGTTCACAGGAAGTGGCTCAGCCCTACTCAATGTCTTCCAGGTGCCCTTGAGgtaggcacgattttgtttcatgtagtttacaaagttatttaagccatctg-aatcacata-cagtttcgttgcattccataaacag
 || ||||||||||| || |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| || || ||||| | |  ||||||||||  |           |||||| |||||  ||  |||||| | ||| || ||| |||||     ||   ||  |  |||| | ||
GGGTACATTGACTGATACTCCTGCCATCCTTGTTTTTGTTGCTCGGAAGGTGCACAGGAAGTGGCTCAGCCCTACACAGTGCCTTCCGGCTCACCTTGAGgtatacgga--------tcatgtggtttagcaatatatttaggtcatatgcaattacataatgaatttactgtgt--catacatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29946876|gb|CB816368.1|CB816368
EST:     TTCACAGGAAGTGGCTCAGCCCTACTCAATGTCTTCCAGGTGCCCTTGAG                         GGACCTGGGGGTGTGTGGTGTGATGTTGATGTTGTTGAATTTTCTTATTAT
genomic: TTCACAGGAAGTGGCTCAGCCCTACTCAATGTCTTCCAGGTGCCCTTGAGgtaggcacga ... ccataaacagGGACCTGGGGGTGTGTGGTGTGATGTTGATGTTGTTGAATTTTCTTATTAT