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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCTGCAGCTTGCTGAAGATCTTGCCAAAACATGTGTTGAGATGTACTTCGTGACCTCTACCGGCCTTGCTCCTGAAATAGCTTATTTCCACATTGAGgtaaacagtttactaagtcactatgcatcttaatatactcctgagtttggtcaactatcctttgtttaatgctgtttcaatattttgattttgcgtatgaatgacttacgatatggagtttctacag

Basic information

species Zea mays
transcript GRMZM2G150201_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150201_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g11850.1 (Oryza sativa), 5'ss of exon 4
AAATCTGCAGCTTGCTGAAGATCTTGCCAAAACATGTGTTGAGATGTACTTCGTGACCTCTACCGGCCTTGCTCCTGAAATAGCTTATTTCCACATTGAGgtaaacagtttactaagtcactatgcatcttaatatactcctgagtttggtcaactatcctttgtttaatgctgtttcaat--attttgattttgcgtatgaatgacttac-gatatggagtttctacag
 ||||||||||||||||||||| | |||||||| |||||||| |||||||| ||||| ||||| || |||||||||||||| |||||||| |||||||||||||   ||| |  |  | |    | ||   ||| ||||||||| ||   ||  | ||   |||||   |    | |  ||  || |  ||||||  | ||||  |  ||  |  |||    || |||||
CAATCTGCAGCTTGCTGAAGATTTGGCCAAAACTTGTGTTGAAATGTACTTTGTGACATCTACTGGACTTGCTCCTGAAATTGCTTATTTTCACATTGAGgtaagtggttcagcattttatggagtattacaatgtactcctgaattaaatct-ccattacttgttatttttcatatatattgatgtccattttgattttgaagaaaatattggcatgtgcattttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60397080|gb|DN229899.1|DN229899
EST:     CGGCCTTGCTCCTGAAATAGCTTATTTCCACATTGAG                         GGTGATACAGAAGGGGGGCCTGATGGTGGGAATAAAAGCTCCAAATATATC
genomic: CGGCCTTGCTCCTGAAATAGCTTATTTCCACATTGAGgtaaacagtt ... gtttctacagGGTGATACAGAAGGGGGGCCTGATGGTGGGAATAAAAGCTCCAAATATATC
EST: gi|14204264|gb|BG837941.1|BG837941
EST:     TCGTGACCTCTACCGGCCTTGCTCCTGAAATAGCTTATTTCCACATTGAG                         GGTGATACAGAAGGGGGGCCTGATGGTGGGAATAAAAGCTCCAAATATATC
genomic: TCGTGACCTCTACCGGCCTTGCTCCTGAAATAGCTTATTTCCACATTGAGgtaaacagtt ... gtttctacagGGTGATACAGAAGGGGGGCCTGATGGTGGGAATAAAAGCTCCAAATATATC
EST: gi|33102054|gb|CF062014.1|CF062014
EST:     TCGTGACCTCTACCGGCCTTGCTCCTGAAATAGCTTATTTCCACATTGAG                         GGTGATACAGAANNNNNNNCTGATGGTGGGAATAAAAGCTCCAAATATATC
genomic: TCGTGACCTCTACCGGCCTTGCTCCTGAAATAGCTTATTTCCACATTGAGgtaaacagtt ... gtttctacagGGTGATACAGAAGGGGGGCCTGATGGTGGGAATAAAAGCTCCAAATATATC
EST: gi|5325061|gb|AI783252.1|AI783252
EST:     TCGTGACCTCTACCGGCCTTGCTCCTGAAATAGCTTATTTCCACATTGAG                         GGTGATACAGAAGGGGGGCCTGATGGTGGGAATAAAAGCTCCAAATATATC
genomic: TCGTGACCTCTACCGGCCTTGCTCCTGAAATAGCTTATTTCCACATTGAGgtaaacagtt ... gtttctacagGGTGATACAGAAGGGGGGCCTGATGGTGGGAATAAAAGCTCCAAATATATC
EST: gi|74233685|gb|DT641599.1|DT641599
EST:     TCGTGACCTCTACCGGCCTTGCTCCTGAAATAGCTTATTTCCACATTGAG                         GGTGATACAGAAGGGGGGCCTGATGGTGGGAATAAAAGCTCCAAATATATC
genomic: TCGTGACCTCTACCGGCCTTGCTCCTGAAATAGCTTATTTCCACATTGAGgtaaacagtt ... gtttctacagGGTGATACAGAAGGGGGGCCTGATGGTGGGAATAAAAGCTCCAAATATATC
EST: gi|5846873|gb|AI999956.1|AI999956
EST:     TCGTGACCTCTACCGGCCTTGCTCCTGAAATAGCTTATTTCCACATTGAG                         GGTGATACAGAAGGGGGGCCTGATGGTGGGAATAAAAGCTCCAAATATATC
genomic: TCGTGACCTCTACCGGCCTTGCTCCTGAAATAGCTTATTTCCACATTGAGgtaaacagtt ... gtttctacagGGTGATACAGAAGGGGGGCCTGATGGTGGGAATAAAAGCTCCAAATATATC