1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcctgtcacattcgaaatgtttgctgttgaattattgtatactgacatctgtttttgtttactctatgttgaatgattgcag
species | Zea mays |
transcript | GRMZM2G149576_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCTAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGGCA-GEST: gi|71769068|gb|DR967005.1|DR967005
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTG-CAAG
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGTEST: gi|93283801|gb|EB676065.1|EB676065
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGTEST: gi|32841700|gb|CD981381.1|CD981381
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: GATCCTTCTACAAGGGCAATCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGTEST: gi|211463999|gb|FL174252.1|FL174252
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: ATCCTTCTACAAGGGAATTCTGATGTGGGAGGGAGGAGACCAGGATTCTG ACGGAGACACGCGGGCGAGAAGAGCAATCCA-GTCTACCTGCGEST: gi|211469055|gb|FL174275.1|FL174275
genomic: ATCCTTCTACAAGGGCATTCTGATGTGG-AGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCG
EST: GATCCTTCTACAAGGGAATTCTGATGTGGAGGGAGGAGAC-AGGATTCTG ACGGAGACACGCGGGCGAAGA-GAGCAATCCA-GTCTACCTGCGCTGCAGGEST: gi|50323960|gb|CO519086.1|CO519086
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGA-GAAGAGCAATCCAAGTCTACCTGCGCTGCAAG
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAEST: gi|78104608|gb|DV523026.1|DV523026
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCA
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGTEST: gi|211074549|gb|FL187269.1|FL187269
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGNATTCTG ATGGAGA-ACGCGGGCGAGAAGAG-AATCCCAGTCTACCTGCGCTGCAAGTEST: gi|76013549|gb|DT940719.1|DT940719
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGTEST: gi|93282425|gb|EB674689.1|EB674689
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGTEST: gi|71772906|gb|DR970829.1|DR970829
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGTEST: gi|148945370|gb|EC890591.2|EC890591
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGTEST: gi|32840339|gb|CD980020.1|CD980020
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: GATCCTTCTACAAGGGCAATCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGTEST: gi|211466533|gb|FL174266.1|FL174266
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: GATCCTTCTACA-GGGAATTCTGATGTGGAGGGAGGAGACCAGGATTCTG ACGGAGACACGCGGGCGAAGA-GAGCAATCCA-GTCTACCTGCGCTGCAGGEST: gi|148945267|gb|EC890477.2|EC890477
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGA-GAAGAGCAATCCAAGTCTACCTGCGCTGCAAG
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGTEST: gi|78082192|gb|DV510604.1|DV510604
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCAAAGTCTAACTGCGCTGCAAGTEST: gi|149081592|gb|EE170734.2|EE170734
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGTEST: gi|149106747|gb|EE188643.2|EE188643
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGTEST: gi|71769874|gb|DR967811.1|DR967811
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGTEST: gi|149081259|gb|EE170373.2|EE170373
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAAGA-GAGCAATCCAAGTCTACCTEST: gi|211077292|gb|FL187283.1|FL187283
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGA-GAAGAGCAATCCAAGTCTACCT
EST: CCTTCTACAAGGGCATTCTGATGTGGAAGGGGAGGAGTCCCAG-ATTCTG ATGGAGACACGEST: gi|13237072|gb|BG355086.1|BG355086
genomic: CCTTCTACAAGGGCATTCTGATGTGGA-GGG-AGGAGTCC-AGGATTCTGgttggttcct ... atgattgcagATGGAGACACG
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGTEST: gi|211077290|gb|FL187281.1|FL187281
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: ATCCTTCTACA-GGGCATTCTGATGTGGAGGGAGGGAGTCCAG-ATTCTG ATGGAGACACGEST: gi|149081528|gb|EE170664.2|EE170664
genomic: ATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGG-AGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACG
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGTEST: gi|211074544|gb|FL187264.1|FL187264
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCA-TCCAAGTCTACCTGCGCTGCAAGTEST: gi|13237258|gb|BG355272.1|BG355272
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGTEST: gi|149106424|gb|EE188313.2|EE188313
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGNCA-GEST: gi|93284314|gb|EB676578.1|EB676578
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTG-CAAG
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGTEST: gi|149001890|gb|EE038842.2|EE038842
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGTEST: gi|76917339|gb|DV166774.1|DV166774
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAEST: gi|78088725|gb|DV517118.1|DV517118
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAA
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGTEST: gi|71763997|gb|DR961934.1|DR961934
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCTAGTEST: gi|211071814|gb|FL187256.1|FL187256
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: TCCTTCTACAAGGGCATTCTGATGTGGGAGGGAGGAGTCCCAGGAT-CTG ATGGAGA-ACGCCGGGCGAGAAGAGCAATCCA-GTCTACCTGCGCTGCAGEST: gi|89762580|gb|DY690104.1|DY690104
genomic: TCCTTCTACAAGGGCATTCTGATGTGG-AGGGAGGAGTCC-AGGATTCTGgttggttcct ... atgattgcagATGGAGACACGC-GGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAA
EST: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTG ATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGTEST: gi|211082768|gb|FL187309.1|FL187309
genomic: GATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGAGAAGAGCAATCCAAGTCTACCTGCGCTGCAAGT
EST: TCCTTCTACAAGGGCATTCTGATGTGGGAGGGAGGAGTCCNAGGATTCTG ATGGAGACACGCGGGCGAAGA-GAGCAATCCA-GTCTACCTGCGCTGCAA
genomic: TCCTTCTACAAGGGCATTCTGATGTGG-AGGGAGGAGTCC-AGGATTCTGgttggttcct ... atgattgcagATGGAGACACGCGGGCGA-GAAGAGCAATCCAAGTCTACCTGCGCTGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACCTCGTCGAGATCCTTCTACAAGGGCATTCTGATGTGGAGGGAGGAGTCCAGGATTCTGgttggttcctgtcacattcgaaatgtttgctgttgaattattgtatactgacatctgtttttgtttactctatgttgaatgattgcag
- - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - GAGGAG