Sequence
atgc intronic sequence ATGC exonic sequenceAGGTTGATGGCGTGAAGCACTCCGGGCCGACCAAGATGGTGCTCTACTTCACCGGGGCCACAAACATTCTCTACACTTTCGGAGGGCACGCTGTTACCGTgtaaggagacaaaacacctttctttcttttttatatatgcatggtccccggaacaaagaagaagaaataacgcatcacaactgggaccaacgaaagcatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G149481_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g14080.1 (Oryza sativa), 5'ss of exon 5
AGGTTGATGGCGTGAAGCACTCCGGGCCGACCAAGATGGTGCTCTACTTCACCGGGGCCACAAACATTCTCTACACTTTCGGAGGGCACGCTGTTACCGTgtaaggagacaaaacacctttctttcttttttatatat-gcatggtccccggaacaaagaagaagaaataacgcatcacaac--tgggaccaacgaaagcatt
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--GTCGATGGAGTGAAGCACTCGGGCCCTACAAAGATGGTCCTCTACTTCACCGGGGCCACAAACATTCTCTACACCTTCGGTGGGCACGCTGTTACTGTgtaagccgacaaacgctctctattctatgcccctgtgtcaaaaggaatactgcacgaaatggtctcagtcacatgccacaccgtagagagtaccgtaggc---
upper sequence: GRMZM2G149481_T04 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA11G11310.1 (Glycine max), 5'ss of exon 5
AGGTTGATGGCGTGAAGCACTCCGGGCCGACCAAGATGGTGCTCTACTTCACCGGGGCCACAAACATTCTCTACACTTTCGGAGGGCACGCTGTTACCGTgtaaggagac----aaaacacctttctttcttttttatatatgcatggtccccggaacaaagaagaagaaataacgcatcacaactgggaccaacgaaagcatt
| || || || ||||| || || |||||||| |||| || || || || ||||||||||||||||||||||| ||||| || || |||||||| ||||||| | | | | || | |||||| | | ||| | || | | || | | | || || |
--ATGGAAGGAGTTAAGCATTCGGGTCCGACCAAATTGGTTCTATATTTTACGGGGGCCACAAACATTCTCTACACATTCGGGGGACATGCTGTTACTGTgtaagacaatctcagatatatattcgtgtcttttacgttttcgcaaatttgcccatgtttatttctctccacttggcctttgcctttgaacgaataacta----
upper sequence: GRMZM2G149481_T04 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA06G00690.1 (Glycine max), 5'ss of exon 5
AGGTTGATGGCGTGAAGCACTCCGGGCCGACCAAGATGGTGCTCTACTTCACCGGGGCCACAAACATTCTCTACACTTTCGGAGGGCACGCTGTTACCGTgtaaggagacaaaacacctttctttcttttttatatatgcatggtccccggaacaaagaagaagaaataacgcatcacaactgggacca-acgaaagcatt
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--GTGGAGGGGGTTAAGCATTCGGGTCCGACCAAATTGGTTCTATATTTTACGGGGGCCACAAACATTCTCTACACATTTGGGGGACATGCCGTTACTGTgtaaggctg-atatctcatctcatatatgatatgatacgtatctattacgttttgacaaaagtgccttgtttctttcccacttcgttaggacgcatgcatc
upper sequence: GRMZM2G149481_T04 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA06G11540.1 (Glycine max), 5'ss of exon 6
AGGTTGATGGCGTGAAGCACTCCGGGCCGACCAAGATGGTGCTCTACTTCACCGGGGCCACAAACATTCTCTACACTTTCGGAGGGCACGCTGTTACCGTgtaaggagacaaaacacctttctttcttttttatatatgcatggtccccggaa--caaagaagaagaaataacgcatcacaactgggaccaacgaaagcatt
||||| || |||| |||| | ||||| |||| |||| ||||||||||| ||||| || ||||||||||| ||||| || ||||| |||||||| |||| |||| | |||| || | ||||| ||| | || | || | ||| | || | | | || ||
--GTTGAGGGGGTGACGCACACAGGGCCAGCCAAATTGGTTCTCTACTTCACTGGGGCGACCAACATTCTCTATACTTTTGGTGGGCATGCTGTTACAGTgtgaggactcgaaacctaaatcaaattgttttagttataattaactaaagggtttcttctcgtaaagagtaatttgaga-aattaattaaagaggaaaaat-
upper sequence: GRMZM2G149481_T04 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA04G43150.2 (Glycine max), 5'ss of exon 6
AGGTTGATGGCGTGAAGCACTCCGGGCCGACCAAGATGGTGCTCTACTTCACCGGGGCCACAAACATTCTCTACACTTTCGGAGGGCACGCTGTTACCGTgtaaggagacaaaacacctttctttcttttttatatatgcatggtccccggaacaaagaagaagaaataacgcatcacaactgggaccaacgaaagcatt
| ||| || |||| |||| | ||||| |||| |||| ||||||||||| ||||| || ||||||||||| ||||| || || || |||||||| |||| |||| | ||| || | ||||| ||| | | | | || | || | | | | | | | | |
--GCTGAGGGGGTGACGCACACAGGGCCAGCCAAATTGGTTCTCTACTTCACTGGGGCTACCAACATTCTCTATACTTTTGGTGGACATGCTGTTACAGTgtgaggaatcgaaatctaaatcaaattgttttagttataactaatggtttcttctagtaaagaataacatgatgttaatttgagaaattaaagaggaaaa
upper sequence: GRMZM2G149481_T04 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA12G03490.1 (Glycine max), 5'ss of exon 5
AGGTTGATGGCGTGAAGCACTCCGGGCCGACCAAGATGGTGCTCTACTTCACCGGGGCCACAAACATTCTCTACACTTTCGGAGGGCACGCTGTTACCGTgtaaggagaca----aaacacctttctttcttttttatatatgcatggtccccggaacaaagaagaagaaataacgcatcacaactgggaccaacgaaagcatt
| || || || ||||| || || |||||||| |||| || || || || ||||||||||||||||||||||| ||||| || || |||||||| ||||||| | | | | | || | |||||| | | ||| | || | | | || | | || || | | ||| |
--ATGGAAGGAGTTAAGCATTCGGGTCCGACCAAATTGGTTCTATATTTTACGGGGGCCACAAACATTCTCTACACATTCGGGGGACATGCTGTTACTGTgtaagacaatatcagatatatattcgtgtcttttacgttttcgcaaatttgcctgtgtttatttctctccacttggccttgc--ctttgaacgaataaacta--
upper sequence: GRMZM2G149481_T04 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA04G00640.1 (Glycine max), 5'ss of exon 5
AGGTTGATGGCGTGAAGCACTCCGGGCCGACCAAGATGGTGCTCTACTTCACCGGGGCCACAAACATTCTCTACACTTTCGGAGGGCACGCTGTTACCGTgtaaggagacaaaacacctttctttcttttttat-atatgcatggtccccggaacaaagaagaagaaataacgcatcacaactgggaccaacgaaagcatt---
|| || || || ||||| || || |||||||| |||| || || || || ||||||||||||||||||||||| || || || || || ||||| |||||||| | | | | | || | | | ||| ||| | || | || | || | || | | | | | || | ||
--GTGGAAGGAGTTAAGCATTCGGGCCCGACCAAATTGGTTCTATATTTTACGGGGGCCACAAACATTCTCTACACATTTGGGGGACATGCCGTTACTGTgtaaggctg-atatctcatctcatatatatatatgatacgtatcttttacgttttgacaaatta-aagtgccttgtttc--tttcccccttcttggattttggc
upper sequence: GRMZM2G149481_T04 (Zea mays), 5'ss of exon 4
lower sequence: AT2G21050.1 (Arabidopsis thaliana), 5'ss of exon 5
AGGTTGATGGCGTGAAGCACTCCGGGCCGACCAAGATGGTGCTCTACTTCACCGGGGCCACAAACATTCTCTACACTTTCGGAGGGCACGCTGTTACCGTgtaaggagacaaaacacctttctttcttttttata--tatgcatggtccccggaacaaagaagaagaaataacgcatcacaactgggaccaacgaaag-catt-----------------------
|| || || |||||||| || || || | |||| |||| | |||||||| ||||||||||||||||| ||||| ||||| || || |||||||| ||||| | | |||| || || || | || | | || ||| || | | | | ||||| | ||||
--GTAGAAGGAGTGAAGCATTCAGGACCAAGCAAGCTGGTTTTATACTTCACAGGGGCCACAAACATTCTTTACACATTCGGTGGACATGCTGTTACTGTgtatgttctcttttttttacccttttaaccccatcaccattcaca-tatcctaagggtataactggaattacagagtaatgaaaatgaccactcactttcattgtttgtgtgttgtttgttggcag
upper sequence: GRMZM2G149481_T04 (Zea mays), 5'ss of exon 4
lower sequence: AT1G77690.1 (Arabidopsis thaliana), 5'ss of exon 5
AGGTTGATGGCGTGAAGCACTCCGGGCCGACCAAGATGGTGCTCTACTTCACCGGGGCCACAAACATTCTCTACACTTTCGGAGGGCACGCTGTTACCGTgtaaggagacaaaacacctttctttcttttttatatatgcatggtccccggaacaaagaag-aagaaataacgcatcacaactgggaccaacgaaagcatt
| ||| | ||||| ||||| || || |||| |||||||| ||||||||||| ||||| |||||||||||||| || || || ||||| || || ||||||| | ||| ||| || ||| | | | | | | || | || ||| | | || || | || || | | |
--GCTGAGGATGTGAAACACTCTGGTCCAACCACAATGGTGCTTTACTTCACCGGAGCCACCAACATTCTCTACACCTTTGGTGGCCACGCCGTCACAGTgtaagta-----------ttttttttttgtttggaaaaataaaatggcttaattaatggcttaactaattatgtattggaaatttgaaaaaatataatag-
upper sequence: GRMZM2G149481_T04 (Zea mays), 5'ss of exon 4
lower sequence: Vv18s0001g03540.t01 (Vitis vinifera), 5'ss of exon 5
AGGTTGATGGCGTGAAGCACTCCGGGCCGACCAAGATGGTGCTCTACTTCACCGGGGCCACAAACATTCTCTACACTTTCGGAGGGCACGCTGTTACCGTgtaagga---gacaaaacacctttctttcttt--tttatatatgcatg-gtccccggaacaaagaagaagaaataacgcatcacaactgggaccaacgaaagcatt
||||| || ||||||||||| || || ||||| ||||| ||||||||||| ||||| || |||||||||||||| || || || || ||||| || |||| || | | ||| || || | |||||| |||||| || | | | || || | | | | | || | |
--GTTGAGGGGGTGAAGCACTCTGGCCCAACCAAAATGGTTCTCTACTTCACTGGGGCTACCAACATTCTCTACACCTTTGGTGGTCATGCTGTCACAGTgtgagaacttaattaaatactcatcaaaactgcatttatacatgcatttgtatgtacattctcgcatgtctaaaggtacaaccctttttgaaggaaagga------
upper sequence: GRMZM2G149481_T04 (Zea mays), 5'ss of exon 4
lower sequence: Vv03s0038g02140.t01 (Vitis vinifera), 5'ss of exon 5
AGGTTGATGGCGTGAAGCACTCCGGGCCGACCAAGATGGTGCTCTACTTCACCGGGGCCACAAACATTCTCTACACTTTCGGAGGGCACGCTGTTACCGTgtaaggagacaaaacacctttctttcttttttatatatgcatggtccccggaacaaagaagaagaaataacgcatcacaactgggaccaac-gaaagcatt--
| || || ||||| ||||| || || ||||| ||||||| |||||||| ||||| ||||||||||||||||| ||||| || || ||||| || ||||| ||||| | | | ||| | | | ||| | | || || || | ||| | | | | || ||||
--ATGGAAGGAGTGAAACACTCAGGTCCATCCAAGCTGGTGCTATACTTCACAGGGGCTACAAACATTCTCTACACATTCGGGGGACATGCTGTGACTGTgta---agacactgcccttaacttaccaaatggtccatgtttttattatagggttaataaatcagaagagggcagcgcccttaagcccctttgaaaatgactg
upper sequence: GRMZM2G149481_T04 (Zea mays), 5'ss of exon 4
lower sequence: PP1S211_67V6.1 (Physcomitrella patens), 5'ss of exon 5
AGGTTGATGGCGTGAAGCACTCCGGGCCGACCAAGATGGTGCTCTACTTCACCGGGGCCACAAACATTCTCTACACTTTCGGAGGGCACGCTGTTACCGTgtaag-----------gagacaaaacacctttctttcttttttatatatgcatggtccccggaacaaagaagaagaaataacgcatcacaactgggaccaacgaaagcatt-------------------------------------------------------------------------
|||| || || | | |||||| | || ||| | |||||||| || || || |||||||| || |||||||| || ||||||||||| ||||||| | ||| | || || | || | | | || | || | | || | || | | | | || |||| ||
--GTTGCCAATGTCGTCCATACGGCGCCGACAACGAAGGTCTTGTACTTCACAGGAGCAACCAACATTCTGTATACTTTCGGTGGCCACGCTGTTACTGTgtaagtaattgacccagggactaggattctcctattgatgttcaagttttca-gttctcttgtttaatcatgataggaccagtttttatcggtgcacttttcgaatattttttttgtgtacctgcatatttagaccatctaattctgtgaaaggaactttcttggatgtgtatgtcattcgcag
upper sequence: GRMZM2G149481_T04 (Zea mays), 5'ss of exon 4
lower sequence: EFJ34222 (Selaginella moellendorffii), 5'ss of exon 5
AGGTTGATGGCGTGAAGCACTCCGGGCCGACCAAGATGGTGCTCTACTTCACCGGGGCCACAAACATTCTCTACACTTTCGGAGGGCACGCTGTTACCGTgtaaggagacaaaacacctttctttcttttt-tatatatgcatggtccccggaacaaagaagaagaaataacgcatcacaactgggaccaacgaaagcatt
| || || |||||| | || ||| ||| |||||||||||||||| || ||||||||||| ||||| || || ||||| || || || || ||||||| | | ||||| | || || || || || | | | || | | || | |
--GCGGACAATGTCAAGCACACTGGAGCGAGCAAACTGGTGCTCTACTTCACTGGAGCCACAAACATACTCTATACATTTGGAGGCCATGCGGTGACTGTgtaagctttcg---cttctttcgctgttcttgcatggatcgataggcatcttctcataaactttgatcttcccag--------------------------
upper sequence: GRMZM2G149481_T04 (Zea mays), 5'ss of exon 4
lower sequence: EFJ21839 (Selaginella moellendorffii), 5'ss of exon 5
AGGTTGATGGCGTGAAGCACTCCGGGCCGACCAAGATGGTGCTCTACTTCACCGGGGCCACAAACATTCTCTACACTTTCGGAGGGCACGCTGTTACCGTgtaaggagacaaaacacctttctttcttttttatatatgcatggtccccggaacaaagaagaagaaataacgcatcacaactgggaccaacgaaagcatt
| || || |||||| | || ||| ||| |||||||||||||||| || ||||||||||| ||||| || || ||||| || || || || ||||||| | ||| || | | ||||||| | | | | | | | ||| |||| || | | |
--GCGGACAATGTCAAGCACACTGGAGCGAGCAAACTGGTGCTCTACTTCACTGGAGCCACAAACATACTCTATACATTTGGAGGCCATGCGGTGACTGTgtaagc----------tttcgcttctttcgctgttcttgcatggatcgataggctatgttgtcatcttttctcata--aactttgatcttcccag-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71443461|gb|DR824511.1|DR824511EST: ACCGGGGCCACAAACATTCTCTACACTTTCGGAGGGCACGCTGTTACCGT GGAGATCATGCACGCGATGTG
genomic: ACCGGGGCCACAAACATTCTCTACACTTTCGGAGGGCACGCTGTTACCGTgtaaggagac ... atacacgcagGGAGATCATGCACGCGATGTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGTTGATGGCGTGAAGCACTCCGGGCCGACCAAGATGGTGCTCTACTTCACCGGGGCCACAAACATTCTCTACACTTTCGGAGGGCACGCTGTTACCGTgtaaggagacaaaacacctttctttcttttttatatatgcatggtccccggaacaaagaagaagaaataacgcatcacaactgggaccaacgaaagcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacgaaag