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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCGTCGTTCCACAACTACCGGATCTGGTCGTTCCTGGGCCTCGTCATGACCACCTACACGGCGTGGTACCTCGCCGTCGCGTCCCTCATCCATGGCCAGgtacgcaagcgtagcgttgaagcataatatgcattctgtgggcctgtggcctgtggcctgtgggtgaccggccgagacgatgtgtgtgcttctgctgctctacttgttgcag

Basic information

species Zea mays
transcript GRMZM2G149481_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149481_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g14080.1 (Oryza sativa), 5'ss of exon 4
CCCGTCGTTCCACAACTACCGGATCTGGTCGTTCCTGGGCCTCGTCATGACCACCTACACGGCGTGGTACCTCGCCGTCGCGTCCCTCATCCATGGCCAGgtacgcaagcgta---gcgttgaagcataatatgcattctgtgggcctgtggcctgtggcctgtgggtgaccggccgagacgatgt---gtgtgcttctgctgctctacttgttgcag------------------
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    | |  |   ||         ||  |||||   ||   || | |  | | ||    | | |   |  |||   ||  | |    |    || |||||    |    |||                     
CCCGTCGTTCCACAACTACCGGATCTGGTCATTCCTCGGCCTCGTCATGACCACCTACACGGCCTGGTACCTCGCCGTCGCCTCCCTCATCCATGGCCAGgtagtacaacacaaaagcaccatctgttagcatgcagcatgcttgcatttctcgtctgaatagcgaggcgcatgcctgaacattattacattgcgttgtgctgaaaaaacacttgtgttttttgtatgaatatcag

upper sequence: GRMZM2G149481_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA06G11540.1 (Glycine max), 5'ss of exon 5
CCCGTCGTTCCACAACTACCGGATCTGGTCGTTCCTGGGCCTCGTCATGACCACCTACACGGCGTGGTACCTCGCCGTCGCGTCCCTCATCCATGGCCAGgtacgcaagcgtagcgttgaagcataatatgcattctgtgggcctgtggcctgtggcctgtgggtgaccg---gccgagacgatgtgtgtgcttctgctgct-ctacttgttgcag----------------------------------
||| || |||||||||||| | |||||||| ||| |||||||||| |||||||| ||||| || |||||  |  || | || ||||| | |||||||||||||   |  |      || | |      |         |     |   ||   |    |     |||  |    |  |   ||| |      |  |  || | ||| || ||   |                                  
CCCTTCTTTCCACAACTACAGAATCTGGTCATTCTTGGGCCTCGTGATGACCACTTACACTGCATGGTATATGACCATAGCTTCCCTTACCCATGGCCAGgtaaaaagactcgatatttaggagcctcaacatcagcataaaattaaagcaaatcaaataacaatgattgctaacacatgtgatataataagtattattgttgctaattatttgtgttcttcaattaatattctgtgtgtttctctaaag

upper sequence: GRMZM2G149481_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA06G00690.1 (Glycine max), 5'ss of exon 4
CCCGTCGTTCCACAACTACCGGATCTGGTCGTTCCTGGGCCTCGTCATGACCACCTACACGGCGTGGTACCTCGCCGTCGCGTCCCTCATCCATGGCCAGgtacgca-agcgtagcgttgaa-----------gcata-atatgcat-------tctgtgggcctgtggcctgtggc--ctgtgggtgaccggccgagacgatgtgtgtgcttc-tgctgctctacttgttgcag
||| || |||||||||||| | |||||||| || || |||||| |||||||||| ||||| || ||||||||| | || || || ||| | || |||||||||   | |   |||  ||| |           ||||| |||| |||       | | |     | ||   | |      | |  ||| |   |    |  || || |  |||  || | || |  |||| | ||
CCCTTCCTTCCACAACTACAGAATCTGGTCCTTTCTTGGCCTCCTCATGACCACTTACACTGCTTGGTACCTCACTGTTGCCTCTCTCCTTCACGGCCAGgtaataacaatttagatttgcaaataaataaatgcatatatatacatatatatatatatatatatatgaattattatatttattagtggcta-ctataataatatgcgatcttgatgttactatgattgt-gtag

upper sequence: GRMZM2G149481_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA04G00640.1 (Glycine max), 5'ss of exon 4
CCCGTCGTTCCACAACTACCGGATCTGGTCGTTCCTGGGCCTCGTCATGACCACCTACACGGCGTGGTACCTCGCCGTCGCGTCCCTCATCCATGGCCAGgtacgca-agcgtagcgttgaagc---ataat-atgcattctgtgggc-ctgtggcctgtggcc-----tgtgggtgaccggccgagacgatg-tgtgtgcttctgctgct-ctacttgttgcag-----
||| || |||||||||||| | |||||||| || || |||||| |||||||||| ||||| || ||||||||| | || || || ||| | || |||||||||   | |   |||  ||| |     ||||| ||  ||  | |     |||||  || ||        |||   | |  |||    |  ||  | || | |  || || | |||  | |    |     
CCCTTCCTTCCACAACTACAGAATCTGGTCCTTTCTTGGCCTCCTCATGACCACTTACACTGCTTGGTACCTCACAGTTGCCTCTCTCCTTCACGGCCAGgtaataataatttagatttgcaaataaataatcatatatattattcctactgtgatctatgaatcattatgtttcttagtggctactataataatatgcgatcttgatgttactatatatgattgtgtag

upper sequence: GRMZM2G149481_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT2G21050.1 (Arabidopsis thaliana), 5'ss of exon 4
CCCGTCGTTCCACAACTACCGGATCTGGTCGTTCCTGGGCCTCGTCATGACCACCTACACGGCGTGGTACCTCGCCGTCGCGTCCCTCATCCATGGCCAGgtacgcaagcgtagcgttgaagcataatatgcattctgtgggcctgtggcctg--tggcctgtgg-gtgaccggccgagacgatgtgtgtgcttctgctgctctacttgttgcag
 || || |||||||||||| |||||||||| || || || ||| | |||||||| ||||| || ||||||||| || | || ||  || ||||||| ||||||   |    |  | || |    ||||  |  |||   | |     |    |  | ||  |||  ||    |    ||  ||        | ||  |                 
TCCTTCCTTCCACAACTACAGGATCTGGTCTTTTCTTGGACTCTTGATGACCACTTACACTGCTTGGTACCTCACCATTGCCTCTATCCTCCATGGACAGgtaactagttctttctttaa--tctaattagt-ttcaacgagttaaagattagaatagctggtgatgttgtggcttaaggggactcaaaaacatcaacaaagt------------

upper sequence: GRMZM2G149481_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv03s0038g02140.t01 (Vitis vinifera), 5'ss of exon 4
CCCGTCGTTCCACAACTACCGGATCTGGTCGTTCCTGGGCCTCGTCATGACCACCTACACGGCGTGGTACCTCGCCGTCGCGTCCCTCATCCATGGCCAGgtac---gcaagcgtagcgttgaagcataatatgcattctgtgggcctgtggcctgtggcctgtgggtgaccggccgagacgatgtgtgtgcttctgctgctctacttgttgcag
 || || |||||||||||| | |||||||| ||| ||||| |  |||||||||| ||||| || ||||||||| | || || |||||| |||||||||||||||    ||    |  | || || || ||||| ||         | | ||   |      |    || |  |         || | | |  || |     | |   ||  ||||
TCCTTCATTCCACAACTACAGAATCTGGTCCTTCTTGGGCTTGATCATGACCACTTACACTGCCTGGTACCTCACTGTTGCATCCCTCCTCCATGGCCAGgtactatacatatatctcattcaacca-aatatcca------aaacatatgatattaaaatt---agtaaatgattttatttatttatttatttatttatttgttaatgg-gcag