Sequence
atgc intronic sequence ATGC exonic sequenceCTCCCGACTCCAAGGCCTCGACCGAGAGCGTGTACAATGCTGCTCTGGCTCTCGGCATCGCTAACCAGCTGACGAATATTCTCAGAGACGTGGGCGAAGAgtaagtgctggctttattcacagctaactaagcatatatataattctatttttacatcatctgatcgatacgcccacatctgtttgatacggcgcccatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G149317_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os12g43130.1 (Oryza sativa), 5'ss of exon 4
CTCCCGACTCCAAGGCCTCGACCGAGAGCGTGTACAATGCTGCTCTGGCTCTCGGCATCGCTAACCAGCTGACGAATATTCTCAGAGACGTGGGCGAAGAgtaagtgctggctttattcacagctaactaagcatatatataattctatttttacatcatctgat-cgatacgcccacatctgtttgatac--ggcgcccatt-
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CCCCCGACTCGAAGGCCTCAACCGAGAGCGTGTACAACGCTGCGCTAGCTCTTGGGATCGCCAACCAGCTGACGAATATTCTCAGAGACGTAGGCGAAGAgtaagtaccaa-tgtgctcactaccagcatgttctttttctgagttaataattgcagactttcacatgataaatatgta---gtttgacacccaatatgtattg
upper sequence: GRMZM2G149317_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA08G41890.1 (Glycine max), 5'ss of exon 5
CTCCCGACTCCAAGGCCTCGACCGAGAGCGTGTACAATGCTGCTCTGGCTCTCGGCATCGCTAACCAGCTGACGAATATTCTCAGAGACGTGGGCGAAGAgtaagtgctggctttattcacagctaactaagcatatatataattctatttttacatcatctgatcgatacgcccacatctgtttgat-----acggcgcccatt-
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CACCAGAATCAAAGGCTACAACAGAGAGCGTTTATAATGCTGCATTGGCACTTGGCATAGCTAATCAACTTACCAACATTCTCAGAGACGTTGGAGAAGAgtaaggat---ctttaaatgcaa-taat--atcttgtatttgaacctaaatatagaagttagaattacaactcaccttgtagtttaagtatcagtgacattcgttc
upper sequence: GRMZM2G149317_T03 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA18G13700.1 (Glycine max), 5'ss of exon 4
-CTCCCGACTCCAAGGCCTCGACCGAGAGCGTGTACAATGCTGCTCTGGCTCTCGGCATCGCTAACCAGCTGACGAATATTCTCAGAGACGTGGGCGAAGAgtaagtgctggctttattcacagc--taacta--agcatatatataattc-tatttttacatcatctgatcgatacgcccacatctgtttgatacggcgcccatt
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GCACCAGAATCAAAGGCTTCGACAGAGAGTGTCTATAATGCTGCATTGGCACTTGGCATTGCTAATCAACTTACCAACATTCTCAGAGACGTTGGAGAAGagtaaggat---ctttaaatacaacaatatcttgtagttttagtatgactgacattcatacataaaaacctcaat---tccaagaaagtatatctcaacaataaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|1531735|gb|AA051885.1|AA051885EST: CTCGGCATCGCTAACCAGCTGACGAATATTCTCAGAGACGTGGGCGAAGA TGCGAGGAGGGG
genomic: CTCGGCATCGCTAACCAGCTGACGAATATTCTCAGAGACGTGGGCGAAGAgtaagtgctg ... ggaatttcagTGCGAGGAGGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCCCGACTCCAAGGCCTCGACCGAGAGCGTGTACAATGCTGCTCTGGCTCTCGGCATCGCTAACCAGCTGACGAATATTCTCAGAGACGTGGGCGAAGAgtaagtgctggctttattcacagctaactaagcatatatataattctatttttacatcatctgatcgatacgcccacatctgtttgatacggcgcccatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA