Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAGgtatagccgttaatttctattcccctgttgacattttttggaccaattcttgtattttaagttcaccagcactaggatgcagtttctatgacatggtctt...

Basic information

species Zea mays
transcript GRMZM2G148130_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G148130_T04 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os03g47770.1 (Oryza sativa), 5'ss of exon 4
GTTATATTTCTGCATCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAGgta---tagccgttaatttctattcccctgttgacattttttggaccaattcttgtattttaagttcaccagcactaggatgcagtttctatgacatggtctt
|| |||||||| |||||||| || |||||||| ||||||||||| ||||| || |||||||||||||   |    ||    | |||||      |  | | || |||      ||||||    ||  |  |||       |   |   |  | ||   |||  |   
GTCATATTTCTTCATCCAGCGCCAATGCATCCGCACATTTACAGCAATGGGCATATCTGTTTAGgtaaaatgattgtatgctcctattgatgcataaataattgttgttttcgttcttgatgcttttgcccactccattaattctcttgggtgtacagcatttt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88755064|gb|DY539205.1|DY539205
EST:     CCACACATTTCCAGTAATGGACACATCTGTTTAG                         ATATATTGTATGACTCGTGGTCCCCAGCAATGACTGTCAGTTCTATCTGTA
genomic: CCACACATTTACAGTAATGGACACATCTGTTTAGgtatagccgt ... ttacctacagATATATTGTATGACTCGTGGTCCCCAGCAATGACTGTCAGTTCTATCTGTA
EST: gi|88757761|gb|DY541902.1|DY541902
EST:     TCCAGCCCCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAG                         ATATATTGTATGACTCGTGGTCCCCACCAATGACTGTCAGTTCTATCTGTA
genomic: TCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAGgtatagccgt ... ttacctacagATATATTGTATGACTCGTGGTCCCCAGCAATGACTGTCAGTTCTATCTGTA
EST: gi|71427893|gb|DR808943.1|DR808943
EST:     TCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAG                         ATATATTGTATGACTCGTGGTCCCCAGCAATGACTGTCAGTTCTATCTGTA
genomic: TCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAGgtatagccgt ... ttacctacagATATATTGTATGACTCGTGGTCCCCAGCAATGACTGTCAGTTCTATCTGTA
EST: gi|89754929|gb|DY685543.1|DY685543
EST:     AGTAATGGACACATCTGTTTAG                         ATATATTGTATGACTCGTGGTCCCCAGCAATGACTGTCAGTTCTATCTGTA
genomic: AGTAATGGACACATCTGTTTAGgtatagccgt ... ttacctacagATATATTGTATGACTCGTGGTCCCCAGCAATGACTGTCAGTTCTATCTGTA
EST: gi|211054652|gb|FL411716.1|FL411716
EST:     TCCAGCACCGATGCATCCACACATTTACAGTAACGGACACATCTGTTTAG                         ATATATTGTATGACTCGTGGTCCCCAGCAATGACTGTCAGTTCTATCTGTA
genomic: TCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAGgtatagccgt ... ttacctacagATATATTGTATGACTCGTGGTCCCCAGCAATGACTGTCAGTTCTATCTGTA
EST: gi|71445359|gb|DR826409.1|DR826409
EST:     TCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAG                         ATATATTGTATGACTCGTGGTCCCCAGCAATGACTGTCAGTTCTATCTGTA
genomic: TCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAGgtatagccgt ... ttacctacagATATATTGTATGACTCGTGGTCCCCAGCAATGACTGTCAGTTCTATCTGTA
EST: gi|71445358|gb|DR826408.1|DR826408
EST:     TCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAG                         ATATATTGTATGACTCGTGGTCCCCAGCAATGACTGTCAGTTCTATCTGTA
genomic: TCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAGgtatagccgt ... ttacctacagATATATTGTATGACTCGTGGTCCCCAGCAATGACTGTCAGTTCTATCTGTA
EST: gi|76292123|gb|DV031691.1|DV031691
EST:     TCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAG                         ATATATTGTATGACTCGTGGTCCCCAGCAATGACTGTCAGTTCTATCTGTA
genomic: TCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAGgtatagccgt ... ttacctacagATATATTGTATGACTCGTGGTCCCCAGCAATGACTGTCAGTTCTATCTGTA
EST: gi|86475096|gb|DY241466.1|DY241466
EST:     TCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAG                         ATATATTGTATGACTCGTGGTCCCCAGCAATGACTGTCAGTTCTATCTGTA
genomic: TCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAGgtatagccgt ... ttacctacagATATATTGTATGACTCGTGGTCCCCAGCAATGACTGTCAGTTCTATCTGTA
EST: gi|84980323|gb|DW530672.1|DW530672
EST:     TCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAG                         ATATATTGTATGACTCGTGGTCCCCAGCAATGACTGTCAGTTCTATCTGTA
genomic: TCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAGgtatagccgt ... ttacctacagATATATTGTATGACTCGTGGTCCCCAGCAATGACTGTCAGTTCTATCTGTA
EST: gi|78115399|gb|DV533787.1|DV533787
EST:     TCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAG                         ATATATTGTATGACTCGTGGTCCCCAGCAATGACTGTCAGTTCTATTTGTA
genomic: TCCAGCACCGATGCATCCACACATTTACAGTAATGGACACATCTGTTTAGgtatagccgt ... ttacctacagATATATTGTATGACTCGTGGTCCCCAGCAATGACTGTCAGTTCTATCTGTA
EST: gi|211318355|gb|FL450740.1|FL450740
EST:     ATGCATCCACACATTTACAGTAATGGACACATCTGTTTAG                         ATATATTGTATGATTCGTGGTCCCCAGCAATGACTGTCAGTTCTATCTGTA
genomic: ATGCATCCACACATTTACAGTAATGGACACATCTGTTTAGgtatagccgt ... ttacctacagATATATTGTATGACTCGTGGTCCCCAGCAATGACTGTCAGTTCTATCTGTA