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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcatttttccttgacttgaaaacgatacttcatatagaagcacacctataataataattggttataatttaggttctaaatttgataaagtgga...

Basic information

species Zea mays
transcript GRMZM2G147882_T04
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32925957|gb|CF030769.1|CF030769
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32926415|gb|CF031227.1|CF031227
EST:     TGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: TGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32926466|gb|CF031278.1|CF031278
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32926635|gb|CF031447.1|CF031447
EST:     GTATTACCANAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|71437198|gb|DR818248.1|DR818248
EST:     GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATT                         GATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32926430|gb|CF031242.1|CF031242
EST:     TGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: TGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32926417|gb|CF031229.1|CF031229
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGTAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32925395|gb|CF030207.1|CF030207
EST:     AGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: AGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|76287315|gb|DV026883.1|DV026883
EST:     GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATT                         GATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|71299023|gb|DR785502.1|DR785502
EST:     GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATT                         GATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32926166|gb|CF030978.1|CF030978
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|88756286|gb|DY540427.1|DY540427
EST:     GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATT                         GATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCT
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCT
EST: gi|32926025|gb|CF030837.1|CF030837
EST:     CAAACATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: CAAA-ATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32925152|gb|CF029964.1|CF029964
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|78117759|gb|DV536146.1|DV536146
EST:     GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATT                         GATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32926219|gb|CF031031.1|CF031031
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|78078283|gb|DV506698.1|DV506698
EST:     AGGGAGGCATT                         GATAGTTGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
genomic: AGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32926072|gb|CF030884.1|CF030884
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|50323931|gb|CO519057.1|CO519057
EST:     GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATT                         GATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32926162|gb|CF030974.1|CF030974
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32926197|gb|CF031009.1|CF031009
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|71429426|gb|DR810476.1|DR810476
EST:     GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATT                         GATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|78078284|gb|DV506699.1|DV506699
EST:     GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATT                         GATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32925587|gb|CF030399.1|CF030399
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32925272|gb|CF030084.1|CF030084
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32925426|gb|CF030238.1|CF030238
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCACTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA
EST: gi|32925266|gb|CF030078.1|CF030078
EST:     GTATTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCGTT                         GAGAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTCGCTCTAGATCTAGA
genomic: GTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcat ... aaattttcagGATAGTAGCAAAATCAGTCGCAAGGATCATCGCTCTTGCTCTAGATCTAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGTACTACCAAAATGGAGAGAAGTGATGGAGCAATATCACAGGGAGGCATTgtgagttcatttttccttgacttgaaaacgatacttcatatagaagcacacctataataataattggttataatttaggttctaaatttgataaagtgga

- - - - - - - TGGAGA
- - - - - - - - -  AGAAGT
- - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - GGAGCA