1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGGAAGGTCTCCTGCTCACAATTATGCTTCAACTAGCACGGGAGCATTCACTGATGAGAGGACAATAGGTGTTTCAGGTCTTGGAGAGGGTTCTCCCAAGgtaattgtttcctgctatcgtattcaatgaacatattaattcatatcatcctgaaaacttactagtccccttcgtattccag
species | Zea mays |
transcript | GRMZM2G147811_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGATGAGAGGACAATAGGTGTTTCAGGTCTTGGAGAGGGTTCTCCCAAG AGTGAGAGATCAGCAGACATGTTTTGTGATGACATTTTCGGAGAATCACCCEST: gi|32827079|gb|CD966757.1|CD966757
genomic: CTGATGAGAGGACAATAGGTGTTTCAGGTCTTGGAGAGGGTTCTCCCAAGgtaattgttt ... cgtattccagAGTGAGAGATCAGCAGACATGTTTTGTGATGACATTTTCGGAGAATCACCC
EST: CTGATGAGAGGACAATAGGTGTTTCAGGTCTTGGAGAGGGTTCTCCCAAG AGTGAGAGATCAGCAGACATGTTTTGTGATGACATTTTCGGAGAATCACCCEST: gi|160481614|gb|EY254446.1|EY254446
genomic: CTGATGAGAGGACAATAGGTGTTTCAGGTCTTGGAGAGGGTTCTCCCAAGgtaattgttt ... cgtattccagAGTGAGAGATCAGCAGACATGTTTTGTGATGACATTTTCGGAGAATCACCC
EST: CTGATGAGAGGACAATAGGTGTTTCAGGTCTTGGAGAGGGTTCTCCCAAG AGTGAGAGATCAGCAGACATGTTTTGTGATGACATTTTCGGAGAATCACCC
genomic: CTGATGAGAGGACAATAGGTGTTTCAGGTCTTGGAGAGGGTTCTCCCAAGgtaattgttt ... cgtattccagAGTGAGAGATCAGCAGACATGTTTTGTGATGACATTTTCGGAGAATCACCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGAAGGTCTCCTGCTCACAATTATGCTTCAACTAGCACGGGAGCATTCACTGATGAGAGGACAATAGGTGTTTCAGGTCTTGGAGAGGGTTCTCCCAAGgtaattgtttcctgctatcgtattcaatgaacatattaattcatatcatcctgaaaacttactagtccccttcgtattccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG