1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTGAGAAAGAAATTGGGGCCAAATTTGAGGAGGACCTGGATGCTATGCTTCCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattcatcatgtacctgacatttccaaaatagtttgacagtattttctgagttttgtttgctgtttttttttcag
species | Zea mays |
transcript | GRMZM2G147714_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|31364534|gb|CD448889.1|CD448889
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGTEST: gi|32857956|gb|CD997637.1|CD997637
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
EST: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAG AGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
genomic: CCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattc ... tttttttcagAGGCATGTTTAACAAAGAGAGGATTGCAAAGATGAAGAAAGGTGTAATTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAGAAAGAAATTGGGGCCAAATTTGAGGAGGACCTGGATGCTATGCTTCCAAAGTGTGATGTGATTGTGATCAACACACCTCTTACGGAGAAAACAAGgtttgtattcatcatgtacctgacatttccaaaatagtttgacagtattttctgagttttgtttgctgtttttttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA