1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTCAGCTTGCGCTAAAGCATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgggtgggttaacttgtatgacaattattaattctctttgaatttaggttaatgaatctcgtcatgtgtatcag
species | Zea mays |
transcript | GRMZM2G147671_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAAEST: gi|9254597|gb|BE345080.1|BE345080
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAA
EST: CGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAAEST: gi|211071930|gb|FL190632.1|FL190632
genomic: CGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAA
EST: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAAEST: gi|31353854|gb|CD438211.1|CD438211
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAA
EST: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAAEST: gi|60350002|gb|DN216975.1|DN216975
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAA
EST: GCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAAEST: gi|211069191|gb|FL190616.1|FL190616
genomic: GCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAA
EST: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAAEST: gi|211071927|gb|FL190629.1|FL190629
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAA
EST: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAAEST: gi|29947654|gb|CB816768.1|CB816768
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAA
EST: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAAEST: gi|211069188|gb|FL190613.1|FL190613
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAA
EST: ATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTTCATCGGAAG TCCTGTGAAGTACGACNAGAAAATTTTGGAGACNATCGGGAAGAAGCTGAAEST: gi|5343122|gb|AI795532.1|AI795532
genomic: ATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATT-CATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAA
EST: TCGCCAGAACAAGAGGCAGCAGCAGGAGGATTATAGCATTCATCGGGAAG TCCTGTGAAGTACGACAAGAAAATTTTGGEST: gi|211066454|gb|FL190609.1|FL190609
genomic: TCGCCAGAACAAGAGGCAGCAGCAG-AGGATTATAGCATTCATCGG-AAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGG
EST: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAAEST: gi|67041049|gb|CO467304.1|CO467304
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAA
EST: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAAEST: gi|211047092|gb|FL234544.1|FL234544
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAA
EST: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAAEST: gi|47961624|gb|CN844333.1|CN844333
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAA
EST: CATCGCCAGAACAAGAGGCGGCAGCAGAGGATTATAGCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAAEST: gi|9824997|gb|BE575199.1|BE575199
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAA
EST: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAAEST: gi|211069189|gb|FL190614.1|FL190614
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAA
EST: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAAEST: gi|211069199|gb|FL190624.1|FL190624
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAA
EST: CATCGCCAGAATAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAGTTTTGEST: gi|22472983|gb|BU037463.1|BU037463
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTG
EST: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAATTTTGGAGAEST: gi|211069196|gb|FL190621.1|FL190621
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGGAGA
EST: CATCGCCAGAATAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAEST: gi|67030433|gb|CO459182.1|CO459182
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAA
EST: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAAEST: gi|32915709|gb|CF020521.1|CF020521
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAA
EST: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAAEST: gi|211069190|gb|FL190615.1|FL190615
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAA
EST: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAAEST: gi|31360558|gb|CD444915.1|CD444915
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAA
EST: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAAEST: gi|9952492|gb|BE639075.1|BE639075
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAA
EST: AGGCAGCAGCAGAGGATTATAGCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAAEST: gi|211069198|gb|FL190623.1|FL190623
genomic: AGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAA
EST: ATCGCCAGAATAAGAGGCAGCAGCAGAAGATTATAGCATTCATCGGGAAG TCCTGTGAAGTACGAACAAGAAAGTTTTEST: gi|211069194|gb|FL190619.1|FL190619
genomic: ATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGG-AAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGA-CAAGAAAATTTT
EST: ATCGCCAGAACAAGAGGCAGCAGCAGAGGATTYATAGCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAATTTTGGAGANAATCGGGAAGAAGCTGAAEST: gi|211069200|gb|FL190625.1|FL190625
genomic: ATCGCCAGAACAAGAGGCAGCAGCAGAGGATT-ATAGCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAA
EST: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAG TCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAA
genomic: CATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgg ... tgtgtatcagTCCTGTGAAGTACGACAAGAAAATTTTGGAGACAATCGGGAAGAAGCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAGGCAAACTTGGCTGCGGCAATCCAGGTTGCTCAGCTTGCGCTAAAGCATCGCCAGAACAAGAGGCAGCAGCAGAGGATTATAGCATTCATCGGAAGgtaggcctgggtgggttaacttgtatgacaattattaattctctttgaatttaggttaatgaatctcgtcatgtgtatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT